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Parsing REDCap import error files fails due to missing HOSTNAME environment variable in prescient folder #158

@keerthanasrinivasan22

Description

@keerthanasrinivasan22

Parsing redcap-import-997.err
ME50599_traumatic_brain_injury_screen.csv.flat
Traceback (most recent call last):
File "predict1/utility/rename_RPMS_vars.py", line 37, in
if environ['HOSTNAME'].endswith('orygen.org.au'):
File "predict1/miniconda3/lib/python3.10/os.py", line 680, in getitem
raise KeyError(key) from None
KeyError: 'HOSTNAME'

Observed while parsing files such as:

  • redcap-import-997.err
  • redcap-import-998.err
  • redcap-import-999.err
    It appears the script assumes HOSTNAME exists in the environment, but it is not available in this runtime session

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