Add PyG GNNs Support#1
Open
abdelrahman-helal wants to merge 4 commits into
Open
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Now, the user can sepecify the PyG model to use, load their own graph dataset (as PyG Data object), and run the DA training (currently works with mmd and mmd regression, but can be added to all methods) . An overview can be found at the end of docs/data.md, and a full example is in examples/pyg_node_mmd.
models/gnn_pyg: Support for PyG models (GraphSAGE, GIN, GAT, and GraphConv)
data/pyg_utils: Helper functions for loading data and splitting train/test
methods/node_batch: Helper functions for node-level tasks
I ran the tutorial code after making the changes, and they worked properly and tested the GNN updates with FIREbox vs TNG.