rags2ridges/NAMESPACE at master · CFWP/rags2ridges · GitHub

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# Generated by roxygen2: do not edit by hand

S3method(as.matrix,ridgeP)
S3method(format,ridgeP)
S3method(hist,ptest)
S3method(plot,optPenaltyFusedGrid)
S3method(plot,ptest)
S3method(plot,ridgeP)
S3method(print,optPenaltyFusedGrid)
S3method(print,ptest)
S3method(print,ridgeP)
S3method(summary,ptest)
S3method(summary,ridgeP)
export(CNplot)
export(Communities)
export(DiffGraph)
export(GGMblockNullPenalty)
export(GGMblockTest)
export(GGMmutualInfo)
export(GGMnetworkStats)
export(GGMnetworkStats.fused)
export(GGMpathStats)
export(GGMpathStats.fused)
export(KLdiv)
export(KLdiv.fused)
export(NLL)
export(NLL.fused)
export(PNLL)
export(PNLL.fused)
export(Ugraph)
export(Union)
export(adjacentMat)
export(conditionNumberPlot)
export(covML)
export(covMLknown)
export(createS)
export(default.penalty)
export(default.target)
export(default.target.fused)
export(edgeHeat)
export(evaluateS)
export(evaluateSfit)
export(fullMontyS)
export(fused.test)
export(getKEGGPathway)
export(is.Xlist)
export(isSymmetricPD)
export(isSymmetricPSD)
export(kegg.target)
export(loss)
export(momentS)
export(optPenalty.LOOCV)
export(optPenalty.LOOCVauto)
export(optPenalty.aLOOCV)
export(optPenalty.fused)
export(optPenalty.fused.auto)
export(optPenalty.fused.grid)
export(optPenalty.kCV)
export(optPenalty.kCVauto)
export(pcor)
export(pooledP)
export(pooledS)
export(pruneMatrix)
export(ridgeP)
export(ridgeP.fused)
export(ridgePathS)
export(ridgeS)
export(rmvnormal)
export(sparsify)
export(sparsify.fused)
export(symm)
import(Rcpp)
import(igraph)
import(reshape)
importFrom(Hmisc,minor.tick)
importFrom(RBGL,is.triangulated)
importFrom(RSpectra,eigs_sym)
importFrom(expm,sqrtm)
importFrom(fdrtool,fdrtool)
importFrom(gRbase,is.complete)
importFrom(gRbase,jTree)
importFrom(gRbase,rip)
importFrom(gRbase,triangulate)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,theme)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,postscript)
importFrom(grDevices,rainbow)
importFrom(grDevices,setEPS)
importFrom(graph,numEdges)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,hist)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,rug)
importFrom(graphics,text)
importFrom(methods,as)
importFrom(methods,hasArg)
importFrom(methods,is)
importFrom(reshape,melt)
importFrom(sfsmisc,lseq)
importFrom(snowfall,sfInit)
importFrom(snowfall,sfLibrary)
importFrom(snowfall,sfSapply)
importFrom(snowfall,sfStop)
importFrom(stats,coef)
importFrom(stats,constrOptim)
importFrom(stats,cor)
importFrom(stats,cov2cor)
importFrom(stats,lm.fit)
importFrom(stats,nlm)
importFrom(stats,nlminb)
importFrom(stats,optim)
importFrom(stats,optimize)
importFrom(stats,qqplot)
importFrom(stats,quantile)
importFrom(utils,capture.output)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
useDynLib(rags2ridges)