environment.yml

name: image-stitcher
channels:
  - conda-forge
dependencies:
  - python=3.10
  - aicsimageio
  - dask-image
  - numpy
  - ome-zarr
  - pandas
  - psutil
  - pydantic>=2.10.5
  - pydantic-core>=2.27.2
  - pydantic-settings>=2.7.1
  - napari-ome-zarr
  - napari[all]
  - pyqt
  # Core dependencies for image processing
  - tifffile
  - tqdm
  - networkx
  - scikit-image
  - matplotlib
  # Testing dependencies
  - pytest
  # NOTE: basicpy must be installed in your conda environment with pip.  Run the ./setup_ubuntu_22_04.sh script
  # to handle this, or with your conda environment activated run pip install basicpy.  There is no basicpy
  # package on conda-forge, and the installations instructions suggest pip:
  #   https://basicpy.readthedocs.io/en/latest/installation.html
  # The pip approach seems to handle the jax deps better as well.
  # - basicpy