Verrucomicrobia are prevalent in north-temperate freshwater lakes and display class-level preferences between lake habitats
Authors: Edna Chiang, Marian L. Schmidt, Michelle Berry, Bopaiah A. Biddanda, Ashley Burtner, Thomas H. Johengen, Danna Palladino, Vincent J. Denef
Link to article: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0195112
- analysis: Contains all files used in analysis, including:
- initial_processing: Contains functions and files used to import mothur data into R
- metadata: Contains metadata files used in multiple linear regression modelling and bioenv analysis
- tree_files: Contains files used to create IToL tree
verruco-analysis.Rmd: Code for all data analyses- VerrucoData.RData: RData object created by
initial_processing/verruco-import.R.
- figures: Manuscript figures created by
analysis/verruco-analysis.Rmd - make_tree: Files used to create IToL tree (an organized version of analysis/tree_files)
- mothur_output: Output files from mothur pipeline
- raw_reads: Original fastq files
- tables: Excel files of manuscript tables
Note: This project is under the GNU general public license.