using slurm-extra-param and the leader job

[giardine]

I am using the ENCODE ATAC-seq pipeline. It runs but I am unable to run it using the desired partition options. To run in the desired partition I need to set both
-p burst
-qos burst4x
For jobs other than the leader job I can use slurm-extra-param for this. But the leader job doesn't use the options set in slurm-extra-param. This causes the job to not start.

         JOBID PARTITION     NAME     USER    STATE       TIME      CPUS  NODES NODELIST(REASON) DEPENDENCY
      10610017     burst cromwell   bmg137  RUNNING      41:56         6      1 p-bc-5401 (null)
      10610019     burst cromwell   bmg137  RUNNING      41:56         6      1 p-bc-5403 (null)
      10607621     burst cromwell   bmg137  RUNNING    2:33:23         6      1 p-bc-5404 (null)
      10607372     burst cromwell   bmg137  RUNNING    2:57:03         6      1 p-bc-5401 (null)
      10611534      open  5271.sh   bmg137  RUNNING       8:50         4      1 p-bc-5053 (null)
      10611557  sla-prio CAPER_71   bmg137  PENDING       0:00         1      1 (AssocGrpCpuLimit) (null)
      10607627  sla-prio CAPER_77   bmg137  RUNNING      42:59         1      1 p-bc-5401 (null)
      10607613  sla-prio CAPER_76   bmg137  RUNNING    2:34:16         1      1 p-bc-5401 (null)
      10607361  sla-prio CAPER_70   bmg137  RUNNING    2:58:09         1      1 p-bc-5401 (null)

Notice job CAPER_71 will not start because it is not using the burst partition. How can I set the partition and qos for the leader job?

Thanks,
Belinda