README.md

coral_reef

Repository for the coral reef image segmentation challenge of ImageCLEF 2019

link to the challenge: https://www.crowdai.org/challenges/imageclef-2019-coral-pixel-wise-parsing

installation:

clone this repo

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git clone git@tungsten.filament.uk.com:RD/coral_reef.git
cd coral_reef
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clone git repository for deeplabv3+:

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mkdir src
cd src
git clone https://github.com/jfzhang95/pytorch-deeplab-xception.git
cd ..
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create python environment (e.g. with conda) and activate it

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conda create --name coral_reef python==3.6.7
source activate coral_reef
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install pytorch

---- Cuda available, Cuda version 9.0: ----
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conda install pytorch torchvision cudatoolkit=9.0 -c pytorch
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OR

---- Cuda not available: ---
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conda install pytorch-cpu torchvision-cpu -c pytorch
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install requirements

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pip install --upgrade pip
pip install -r requirements.txt
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