Process completed with exit code 1.

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Process completed with exit code 1.

R CMD check found ERRORs

Running examples in 'SpatialData.plot-Ex.R' failed

Process completed with exit code 1.

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Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v3, actions/checkout@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

No files were found with the provided path: check. No artifacts will be uploaded.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v3, actions/checkout@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v3, actions/checkout@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

Undocumented arguments in Rd file 'plotFrame.Rd'

Missing link(s) in Rd file 'plotFrame.Rd':

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unable to access index for repository https://bioconductor.org/packages/3.24/bioc/bin/windows/contrib/4.7:

unable to access index for repository https://bioconductor.org/packages/3.24/books/bin/windows/contrib/4.7:

unable to access index for repository https://bioconductor.org/packages/3.24/workflows/bin/windows/contrib/4.7:

unable to access index for repository https://bioconductor.org/packages/3.24/data/experiment/bin/windows/contrib/4.7:

unable to access index for repository https://bioconductor.org/packages/3.24/data/annotation/bin/windows/contrib/4.7:

unable to access index for repository https://bioconductor.org/packages/3.24/bioc/bin/windows/contrib/4.7:

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v3, actions/checkout@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

No files were found with the provided path: check. No artifacts will be uploaded.

unable to access index for repository https://bioconductor.org/packages/3.24/workflows/bin/macosx/sonoma-arm64/contrib/4.7:

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fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi

harfbuzz 14.2.0 is already installed and up-to-date. To reinstall 14.2.0, run: brew reinstall harfbuzz