From 9fb2061220452200eaeeb5557178df5b80cda01d Mon Sep 17 00:00:00 2001
From: Hugo Gruson <git@hugogruson.fr>
Date: Thu, 7 May 2026 15:11:11 +0200
Subject: [PATCH 1/4] Add action to check SpatialData.plot on changes to
 SpatialData

---
 .../R-CMD-check-SpatialDataPlot.yaml          | 52 +++++++++++++++++++
 1 file changed, 52 insertions(+)
 create mode 100644 .github/workflows/R-CMD-check-SpatialDataPlot.yaml

diff --git a/.github/workflows/R-CMD-check-SpatialDataPlot.yaml b/.github/workflows/R-CMD-check-SpatialDataPlot.yaml
new file mode 100644
index 00000000..bca3a906
--- /dev/null
+++ b/.github/workflows/R-CMD-check-SpatialDataPlot.yaml
@@ -0,0 +1,52 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, devel]
+  pull_request:
+
+name: R-CMD-check.yaml
+
+permissions: read-all
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macos-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v6
+        with:
+          repository: HelenaLC/SpatialData.Plot
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
+          error-on: '"error"'

From fe6202380ca6d3fc33d8601a1b20299b0528e9a0 Mon Sep 17 00:00:00 2001
From: Hugo Gruson <git@hugogruson.fr>
Date: Thu, 7 May 2026 15:13:01 +0200
Subject: [PATCH 2/4] Edit workflow name

---
 .github/workflows/R-CMD-check-SpatialDataPlot.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/R-CMD-check-SpatialDataPlot.yaml b/.github/workflows/R-CMD-check-SpatialDataPlot.yaml
index bca3a906..5eae2bdc 100644
--- a/.github/workflows/R-CMD-check-SpatialDataPlot.yaml
+++ b/.github/workflows/R-CMD-check-SpatialDataPlot.yaml
@@ -5,7 +5,7 @@ on:
     branches: [main, devel]
   pull_request:
 
-name: R-CMD-check.yaml
+name: check-SpatialData.Plot
 
 permissions: read-all
 

From 69adefabe6ee59b39ae9931d088dc5877ec5fde3 Mon Sep 17 00:00:00 2001
From: Hugo Gruson <git@hugogruson.fr>
Date: Thu, 7 May 2026 15:57:43 +0200
Subject: [PATCH 3/4] Try installing SpatialData from commit that triggered the
 workflow

---
 .github/workflows/R-CMD-check-SpatialDataPlot.yaml | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/R-CMD-check-SpatialDataPlot.yaml b/.github/workflows/R-CMD-check-SpatialDataPlot.yaml
index 5eae2bdc..6576e619 100644
--- a/.github/workflows/R-CMD-check-SpatialDataPlot.yaml
+++ b/.github/workflows/R-CMD-check-SpatialDataPlot.yaml
@@ -42,7 +42,10 @@ jobs:
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: any::rcmdcheck
+          # Install SpatialData from the commit that triggered the workflow
+          extra-packages: |
+            any::rcmdcheck
+            HelenaLC/SpatialData@${{ github.sha }}
           needs: check
 
       - uses: r-lib/actions/check-r-package@v2

From bc8c0eb8fcfa92ec16027dde304ec48b20dbb317 Mon Sep 17 00:00:00 2001
From: Hugo Gruson <git@hugogruson.fr>
Date: Fri, 8 May 2026 13:16:13 +0200
Subject: [PATCH 4/4] Try patching SpatialData.plot DESCRIPTION on the fly

---
 .github/workflows/R-CMD-check-SpatialDataPlot.yaml | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/.github/workflows/R-CMD-check-SpatialDataPlot.yaml b/.github/workflows/R-CMD-check-SpatialDataPlot.yaml
index 6576e619..7468bfd0 100644
--- a/.github/workflows/R-CMD-check-SpatialDataPlot.yaml
+++ b/.github/workflows/R-CMD-check-SpatialDataPlot.yaml
@@ -40,6 +40,14 @@ jobs:
           r-version: ${{ matrix.config.r }}
           http-user-agent: ${{ matrix.config.http-user-agent }}
 
+      # This step can be removed once SpatialData is on Bioconductor, and is removed from Remotes: in SpatialData.plot's DESCRIPTION.
+      - name: Avoid SpatialData version conflict
+        run: |
+          desc <- read.dcf("DESCRIPTION")
+          desc[, "Remotes"] <- sub("HelenaLC/SpatialData,\\s*", "", desc[, "Remotes"])
+          write.dcf(desc, "DESCRIPTION")
+        shell: Rscript {0}
+
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
           # Install SpatialData from the commit that triggered the workflow