How to run tests?

[adamjstewart]

I'm having trouble running the unit tests:

> pytest 
ImportError while loading conftest '/Users/Adam/Downloads/myria3d/tests/conftest.py'.
tests/conftest.py:9: in <module>
    from myria3d.pctl.dataset.toy_dataset import make_toy_dataset_from_test_file
E   ModuleNotFoundError: No module named 'myria3d.pctl'

Any idea what I'm doing wrong?

[leavauchier]

Hello @adamjstewart,
I'm not sure why it does not find this submodule when running directly with the pytest command (I just tried and got the same issue).
Running pytest with python -m pytest works on my side.

[adamjstewart]

I think my problem is missing dependencies. I don't use conda, and haven't yet figured out how to build with pip. What code coverage do you currently have (pytest --cov=myria3d)? That's all I'm trying to figure out.

[adamjstewart]

I think I found a few bugs. The __init__.py in the root of the repo breaks things for me. Also, the lack of __init__.py in the tests directories and subdirectories breaks things too.

[leavauchier]

Better late than never. I've made some clean up lately, using directly pytest rather than python -m pytest should now be ok (__init__.py was the issue as you suggested)!
The current code coverage is around 72%

[adamjstewart]

Fantastic! Want to submit a PR to update https://github.com/torchgeo/torchgeo/blob/v0.9.0/docs/user/metrics/common.py#L84? If you upload coverage reports to codecov/coveralls in CI, then we can also query this dynamically so it stays up-to-date forever.