AnalysisSet.md

AnalysisSet

A file set for analyses. Analysis sets represent the results of a computational analysis of raw genomic data or other analyses.

Properties

Name	Type	Description	Notes
is_on_anvil	bool	Indicates whether the data object has been submitted to AnVIL.	[optional]
doi	str	The Digital Object Identifier (DOI) associated with this object.	[optional]
preview_timestamp	str	The date the object was previewed.	[optional]
input_file_sets	List[str]	The file set(s) required for this analysis.	[optional]
release_timestamp	str	The date the object was released.	[optional]
publications	List[str]	The publications associated with this object.	[optional]
documents	List[str]	Documents that provide additional information (not data file).	[optional]
lab	str	Lab associated with the submission.	[optional]
award	str	Grant associated with the submission.	[optional]
accession	str	A unique identifier to be used to reference the object prefixed with IGVF.	[optional]
alternate_accessions	List[str]	Accessions previously assigned to objects that have been merged with this object.	[optional]
collections	List[str]	Some samples are part of particular data collections.	[optional]
status	str	The status of the metadata object.	[optional]
revoke_detail	str	Explanation of why an object was transitioned to the revoked status.	[optional]
schema_version	str	The version of the JSON schema that the server uses to validate the object.	[optional]
uuid	str	The unique identifier associated with every object.	[optional]
notes	str	DACC internal notes.	[optional]
aliases	List[str]	Lab specific identifiers to reference an object.	[optional]
creation_timestamp	str	The date the object was created.	[optional]
submitted_by	str	The user who submitted the object.	[optional]
submitter_comment	str	Additional information specified by the submitter to be displayed as a comment on the portal.	[optional]
description	str	A plain text description of the object.	[optional]
dbxrefs	List[str]	Identifiers from external resources that may have 1-to-1 or 1-to-many relationships with IGVF file sets.	[optional]
samples	List[str]	Samples associated with this analysis set.	[optional]
donors	List[str]	The donors of the samples associated with this analysis set.	[optional]
file_set_type	str	The level of this analysis set.	[optional]
supersedes	List[str]	The file set(s) that this file set supersedes by virtue of being newer, better, or a fixed version of etc. than the one(s) it supersedes.	[optional]
external_image_data_url	str	Links to the external site where images and related data produced by this analysis are stored.	[optional]
demultiplexed_samples	List[str]	The sample(s) associated with this analysis set inferred through demultiplexing.	[optional]
uniform_pipeline_status	str	The status of the single cell or Perturb-seq uniform pipeline processing for this analysis set, if applicable.	[optional]
pipeline_parameters	List[str]	The document(s) or file(s) providing necessary configurations for reproducing the analysis.	[optional]
id	str		[optional]
type	List[str]		[optional]
summary	str		[optional]
files	List[str]	The files associated with this file set.	[optional]
control_for	List[str]	The file sets for which this file set is a control.	[optional]
superseded_by	List[str]	File set(s) this file set is superseded by virtue of those file set(s) being newer, better, or a fixed version of etc. than this one.	[optional]
submitted_files_timestamp	str	The timestamp the first file object in the file_set or associated auxiliary sets was created.	[optional]
input_for	List[str]	The file sets that use this file set as an input.	[optional]
construct_library_sets	List[str]	The construct library sets associated with the samples of this file set.	[optional]
data_use_limitation_summaries	List[str]	The data use limitation summaries of institutional certificates covering the sample associated with this file set which are signed by the same lab (or their partner lab) as the lab that submitted this file set.	[optional]
controlled_access	bool	The controlled access of the institutional certificates covering the sample associated with this file set which are signed by the same lab (or their partner lab) as the lab that submitted this file set.	[optional]
preferred_assay_titles	List[str]	Preferred Assay Title(s) of assays that produced data analyzed in the analysis set.	[optional]
assay_titles	List[str]	Ontology term names from Ontology of Biomedical Investigations (OBI) for assays	[optional]
assay_slims	List[str]	A broad categorization of the assay term.	[optional]
protocols	List[str]	Links to the protocol(s) for conducting the assay on Protocols.io.	[optional]
sample_summary	str	A summary of the samples associated with input file sets of this analysis set.	[optional]
functional_assay_mechanisms	List[str]	The biological processes measured by the functional assays.	[optional]
workflows	List[str]	A workflow for computational analysis of genomic data. A workflow is made up of analysis steps.	[optional]
targeted_genes	List[str]	A list of genes targeted by the input measurement sets assays.	[optional]
enrichment_designs	List[str]	The enrichment designs used by the inputs of this analysis set.	[optional]

Example

from igvf_client.models.analysis_set import AnalysisSet

# TODO update the JSON string below
json = "{}"
# create an instance of AnalysisSet from a JSON string
analysis_set_instance = AnalysisSet.from_json(json)
# print the JSON string representation of the object
print(AnalysisSet.to_json())

# convert the object into a dict
analysis_set_dict = analysis_set_instance.to_dict()
# create an instance of AnalysisSet from a dict
analysis_set_from_dict = AnalysisSet.from_dict(analysis_set_dict)

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