Upload v2 data to GCP

[adamklie]

Context

Upload v2 results for igvf-data/igvf_sc-islet_10X-Multiome to GCP via bin/9_upload/1_upload_to_gcp.ipynb.

Tasks

• Format and upload single cell matrices (especially ATAC)
• Format and upload pseudobulk results
• Format and upload differential analysis results (when finalized)

[adamklie]

Dependencies

• Blocked by Finalize DESeq2 pseudobulk methodology for RNA and ATAC #4 (needs finalized differential analysis), Finalize peak calling #5 (needs finalized peaks)

[adamklie]

Status Update (2026-04-09)

Still blocked on #4 (DESeq2 finalization). #5 (peaks) is done. Low priority — focusing on upstream analyses first.