filterRead/NAMESPACE at master · JonSulc/filterRead · GitHub

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# Generated by roxygen2: do not edit by hand

S3method("!",genomic_regions)
S3method("&",filter_condition)
S3method("&",genomic_regions)
S3method("+",genomic_regions)
S3method("-",genomic_regions)
S3method("==",genomic_regions)
S3method("[",file_interface)
S3method("[",filter_condition)
S3method("[",genomic_regions)
S3method("[<-",filter_condition)
S3method("[[",filter_condition)
S3method("[[<-",filter_condition)
S3method("build<-",data.table)
S3method("build<-",default)
S3method("build<-",file_interface)
S3method("build<-",filter_condition)
S3method("build<-",list)
S3method("|",filter_condition)
S3method("|",genomic_regions)
S3method(as_filter_condition,default)
S3method(as_filter_condition,quosure)
S3method(as_genomic_regions,data.frame)
S3method(as_genomic_regions,eq_filter_condition)
S3method(as_genomic_regions,filter_condition)
S3method(as_genomic_regions,gt_filter_condition)
S3method(as_genomic_regions,gte_filter_condition)
S3method(as_genomic_regions,lt_filter_condition)
S3method(as_genomic_regions,lte_filter_condition)
S3method(as_genomic_regions,neq_filter_condition)
S3method(build,character)
S3method(build,default)
S3method(build,file_interface)
S3method(build,filter_condition)
S3method(build,list)
S3method(dimnames,file_interface)
S3method(format,filter_condition)
S3method(has_finterface_column_names,default)
S3method(has_finterface_column_names,quosure)
S3method(head,file_interface)
S3method(is_atomic_filter_condition,list)
S3method(is_atomic_filter_condition,quosure)
S3method(is_composite_filter_condition,list)
S3method(is_composite_filter_condition,quosure)
S3method(length,filter_condition)
S3method(liftover,data.table)
S3method(liftover,genomic_regions)
S3method(new_filter_condition,"(")
S3method(new_filter_condition,default)
S3method(new_filter_condition,genomic_regions)
S3method(new_filter_condition,name)
S3method(new_filter_condition,quosure)
S3method(post_process,and_filter_condition)
S3method(post_process,eq_filter_condition)
S3method(post_process,filter_condition)
S3method(post_process,genomic_regions)
S3method(post_process,gt_filter_condition)
S3method(post_process,gte_filter_condition)
S3method(post_process,in_filter_condition)
S3method(post_process,lp_filter_condition)
S3method(post_process,lt_filter_condition)
S3method(post_process,lte_filter_condition)
S3method(post_process,neq_filter_condition)
S3method(post_process,or_filter_condition)
S3method(print,file_interface)
S3method(print,filter_condition)
S3method(print,genomic_regions)
S3method(rbind,genomic_regions)
S3method(str,genomic_regions)
export("build<-")
export(add_build_versioned_columns)
export(add_variant_id)
export(as_filter_condition)
export(build)
export(clear_chain_cache)
export(compact)
export(complete_missing_stats)
export(estimate_effect_from_zscore)
export(get_chain_path)
export(get_dbsnp_path)
export(has_finterface_column_names)
export(is_atomic_filter_condition)
export(is_composite_filter_condition)
export(is_file_interface)
export(liftover)
export(new_file_interface)
export(new_filter_condition)
export(normalize_build)
export(post_process)
export(read_file_interface)
export(reset_config)
export(set_chain_path)
export(set_dbsnp_path)
export(setup_chain_files)
export(setup_dbsnp)
import(curl)
import(data.table)
importFrom(purrr,walk)
importFrom(rlang,caller_env)
importFrom(rlang,enexpr)
importFrom(rlang,env)
importFrom(stats,na.omit)
importFrom(stats,setNames)
importFrom(stringr,str_detect)
importFrom(stringr,str_match)
importFrom(stringr,str_trim)
importFrom(utils,capture.output)
importFrom(utils,download.file)
importFrom(utils,head)
importFrom(utils,str)