Hello,
I'm currently running the SCAPE package on some single-cell GRCm39 data, and it's running well up until the last step where it's concatenating the final sheet, where it gives this error:
2024-07-02 10:45:19.226 | INFO | cli.apamix:apamix:197 - Concating your final sheet
multiprocessing.pool.RemoteTraceback:
"""
Traceback (most recent call last):
File "/workspace/software/Miniconda3/envs/scape/lib/python3.7/multiprocessing/pool.py", line 121, in worker
result = (True, func(*args, **kwds))
File "/workspace/software/scape/apamix/inference.py", line 262, in wraper_process
return run(arg)
File "/workspace/software/scape/apamix/inference.py", line 168, in run
apa_reads.polya_len_arr.append(r1_dt)
UnboundLocalError: local variable 'r1_dt' referenced before assignment
"""
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/workspace/software/scape/main.py", line 4, in
cli()
File "/workspace/software/Miniconda3/envs/scape/lib/python3.7/site-packages/click/core.py", line 722, in call
return self.main(*args, **kwargs)
File "/workspace/software/Miniconda3/envs/scape/lib/python3.7/site-packages/click/core.py", line 697, in main
rv = self.invoke(ctx)
File "/workspace/software/Miniconda3/envs/scape/lib/python3.7/site-packages/click/core.py", line 1066, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/workspace/software/Miniconda3/envs/scape/lib/python3.7/site-packages/click/core.py", line 895, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/workspace/software/Miniconda3/envs/scape/lib/python3.7/site-packages/click/core.py", line 535, in invoke
return callback(*args, **kwargs)
File "/workspace/software/scape/cli/apamix.py", line 202, in apamix
df = df.get()
File "/workspace/software/Miniconda3/envs/scape/lib/python3.7/multiprocessing/pool.py", line 657, in get
raise self._value
UnboundLocalError: local variable 'r1_dt' referenced before assignment
I've previously run it on some single cell Grch38 human data without issue, so I'm surprised to see this error now.
Thanks,
Mike
Hello,
I'm currently running the SCAPE package on some single-cell GRCm39 data, and it's running well up until the last step where it's concatenating the final sheet, where it gives this error:
I've previously run it on some single cell Grch38 human data without issue, so I'm surprised to see this error now.
Thanks,
Mike