Unable to install the selectionTools pipeline

[aastha-v]

Hello!
I get the following error while trying to ./install.sh :
vcf_file.cpp: In constructor ‘vcf_file::vcf_file()’:
vcf_file.cpp:25:13: error: cannot convert ‘bool’ to ‘gzFile {aka gzFile_s*}’ in assignment
gzvcf_in = false;
^~~~~
Makefile:53: recipe for target 'vcf_file.o' failed
make[1]: *** [vcf_file.o] Error 1
Could you please help me fix it?
Thanks!

[murraycadzow]

Hi @aastha-v,
It's difficult to know exactly why this is failing without some more context. Do you have the full install log available?

It should also be noted that this pipeline was last updated in 2015 and many of the tools have since been updated

regards,
Murray

[aastha-v]

Hi Mr. Cadzow,
I was able to run the pipeline using an older version of Ubuntu to install it. However, I'm not sure the results I've obtained for the test data are correct. Particularly, the plots for iHS look very different from expected. The "CEUchr2.RData" file has also failed to generate.
Is there any possible way to address this problem? I have attached the log files here.
I'm mainly interested in calculating iHS and Fst.
Thanks!
multi_population.log
install.log