diff --git a/.editorconfig b/.editorconfig
new file mode 100644
index 000000000..473ccf5bc
--- /dev/null
+++ b/.editorconfig
@@ -0,0 +1,19 @@
+# EditorConfig is awesome: https://EditorConfig.org
+
+# top-most EditorConfig file
+root = true
+
+# Tab indentation
+[*]
+indent_style = tab
+trim_trailing_whitespace = true
+
+# Additional file configuration
+charset = utf-8
+insert_final_newline = true
+
+# The indent size used in the `package.json` file cannot be changed
+# https://github.com/npm/npm/pull/3180#issuecomment-16336516
+[{*.yml,*.yaml,package.json}]
+indent_style = space
+indent_size = 2
diff --git a/.eslintrc.json b/.eslintrc.json
new file mode 100644
index 000000000..4094f495c
--- /dev/null
+++ b/.eslintrc.json
@@ -0,0 +1,46 @@
+{
+ "env": {
+ "browser": true,
+ "es6": true
+ },
+ "plugins": [
+ "requirejs"
+ ],
+ "extends": [
+ "eslint:recommended",
+ "plugin:requirejs/recommended"
+ ],
+ "parser": "babel-eslint",
+ "parserOptions": {
+ "ecmaVersion": 6
+ },
+ "rules": {
+ "indent": [
+ "error",
+ "tab"
+ ],
+ "linebreak-style": [
+ "error",
+ "windows"
+ ],
+ "quotes": [
+ "error",
+ "double"
+ ],
+ "semi": [
+ "error",
+ "always"
+ ]
+ },
+ "overrides": [
+ {
+ "files": [
+ "settings.js"
+ ],
+ "rules": {
+ "no-unused-vars": "off",
+ "no-undef": "off"
+ }
+ }
+ ]
+}
diff --git a/.jshintrc b/.jshintrc
deleted file mode 100644
index 56fbfc0e3..000000000
--- a/.jshintrc
+++ /dev/null
@@ -1,122 +0,0 @@
-{
- // --------------------------------------------------------------------
- // JSHint Configuration, Strict Edition
- // --------------------------------------------------------------------
- //
- // This is a options template for [JSHint][1], using [JSHint example][2]
- // and [Ory Band's example][3] as basis and setting config values to
- // be most strict:
- //
- // * set all enforcing options to true
- // * set all relaxing options to false
- // * set all environment options to false, except the browser value
- // * set all JSLint legacy options to false
- //
- // [1]: http://www.jshint.com/
- // [2]: https://github.com/jshint/node-jshint/blob/master/example/config.json
- // [3]: https://github.com/oryband/dotfiles/blob/master/jshintrc
- //
- // @author http://michael.haschke.biz/
- // @license http://unlicense.org/
-
- // == Enforcing Options ===============================================
- //
- // These options tell JSHint to be more strict towards your code. Use
- // them if you want to allow only a safe subset of JavaScript, very
- // useful when your codebase is shared with a big number of developers
- // with different skill levels.
- "bitwise": true, // Prohibit bitwise operators (&, |, ^, etc.).
- "curly": true, // Require {} for every new block or scope.
- "eqeqeq": false, // Require triple equals i.e. `===`.
- "forin": true, // Tolerate `for in` loops without `hasOwnPrototype`.
- "immed": true, // Require immediate invocations to be wrapped in parens e.g. `( function(){}() );`
- "latedef": true, // Prohibit variable use before definition.
- "newcap": true, // Require capitalization of all constructor functions e.g. `new F()`.
- "noarg": true, // Prohibit use of `arguments.caller` and `arguments.callee`.
- "noempty": true, // Prohibit use of empty blocks.
- "nonew": true, // Prohibit use of constructors for side-effects.
- "plusplus": false, // Prohibit use of `++` & `--`.
- "regexp": true, // Prohibit `.` and `[^...]` in regular expressions.
- "undef": true, // Require all non-global variables be declared before they are used.
- "strict": false, // Require `use strict` pragma in every file.
- "trailing": true, // Prohibit trailing whitespaces.
-
- // == Relaxing Options ================================================
- //
- // These options allow you to suppress certain types of warnings. Use
- // them only if you are absolutely positive that you know what you are
- // doing.
-
- "asi": false, // Tolerate Automatic Semicolon Insertion (no semicolons).
- "boss": false, // Tolerate assignments inside if, for & while. Usually conditions & loops are for comparison, not assignments.
- "debug": false, // Allow debugger statements e.g. browser breakpoints.
- "eqnull": false, // Tolerate use of `== null`.
- "evil": false, // Tolerate use of `eval`.
- "expr": false, // Tolerate `ExpressionStatement` as Programs.
- "funcscope": false, // Tolerate declarations of variables inside of control structures while accessing them later from the outside.
- "globalstrict": false, // Allow global "use strict" (also enables 'strict').
- "iterator": false, // Allow usage of __iterator__ property.
- "lastsemic": false, // Tolerat missing semicolons when the it is omitted for the last statement in a one-line block.
- "laxbreak": false, // Tolerate unsafe line breaks e.g. `return [\n] x` without semicolons.
- "laxcomma": false, // Suppress warnings about comma-first coding style.
- "loopfunc": false, // Allow functions to be defined within loops.
- "multistr": false, // Tolerate multi-line strings.
- "onecase": false, // Tolerate switches with just one case.
- "proto": false, // Tolerate __proto__ property. This property is deprecated.
- "regexdash": false, // Tolerate unescaped last dash i.e. `[-...]`.
- "scripturl": true, // Tolerate script-targeted URLs.
- "smarttabs": false, // Tolerate mixed tabs and spaces when the latter are used for alignmnent only.
- "shadow": false, // Allows re-define variables later in code e.g. `var x=1; x=2;`.
- "sub": true, // Tolerate all forms of subscript notation besides dot notation e.g. `dict['key']` instead of `dict.key`.
- "supernew": false, // Tolerate `new function () { ... };` and `new Object;`.
- "validthis": false, // Tolerate strict violations when the code is running in strict mode and you use this in a non-constructor function.
-
- // == Environments ====================================================
- //
- // These options pre-define global variables that are exposed by
- // popular JavaScript libraries and runtime environments—such as
- // browser or node.js.
- "esversion": 5,
- "browser": true, // Standard browser globals e.g. `window`, `document`.
- "couch": false, // Enable globals exposed by CouchDB.
- "devel": false, // Allow development statements e.g. `console.log();`.
- "dojo": false, // Enable globals exposed by Dojo Toolkit.
- "jquery": false, // Enable globals exposed by jQuery JavaScript library.
- "mootools": false, // Enable globals exposed by MooTools JavaScript framework.
- "node": false, // Enable globals available when code is running inside of the NodeJS runtime environment.
- "nonstandard": false, // Define non-standard but widely adopted globals such as escape and unescape.
- "prototypejs": false, // Enable globals exposed by Prototype JavaScript framework.
- "rhino": false, // Enable globals available when your code is running inside of the Rhino runtime environment.
- "wsh": false, // Enable globals available when your code is running as a script for the Windows Script Host.
-
- // == Formatting and Complexity =======================================
- //
- // Indentation and max length work to naturally keep files small,
- // editable, and with limited complexity. The other options are a
- // strict way to enforce these.
-
- //"maxlen": 160, // Maximum line length, helps reduce cyclomatic complexity
- //"indent": 2, // Specify indentation spacing
- //"maxparams": 10, // Maximum number of formal parameters allowed per function
- //"maxdepth": 4, // Maximum nested statement depth for a function
- //"maxstatements": 33, // Maximum number of statements allowed per function
- //"maxcomplexity": 15, // Maximum cyclomatic complexity of a function
- // http://en.wikipedia.org/wiki/Cyclomatic_complexity
-
- // == JSLint Legacy ===================================================
- //
- // These options are legacy from JSLint. Aside from bug fixes they will
- // not be improved in any way and might be removed at any point.
-
- "nomen": false, // Prohibit use of initial or trailing underbars in names.
- "onevar": true, // Allow only one `var` statement per function.
- "passfail": false, // Stop on first error.
- "white": true, // Check against strict whitespace and indentation rules.
-
- "maxerr": 100, // Maximum errors before stopping.
- "predef": [ // Extra globals.
- "require",
- "define",
- "escape"
- ]
-}
\ No newline at end of file
diff --git a/js/const.js b/js/const.js
index aa8d9fb04..d890e3912 100644
--- a/js/const.js
+++ b/js/const.js
@@ -1,411 +1,411 @@
define([
- 'knockout',
- 'appConfig',
- ],
- (
- ko,
- config,
- ) => {
+ "knockout",
+ "appConfig",
+],
+(
+ ko,
+ config,
+) => {
- const minChartHeight = 300;
- const treemapGradient = ["#c7eaff", "#6E92A8", "#1F425A"];
- const defaultDeciles = ["0-9", "10-19", "20-29", "30-39", "40-49", "50-59", "60-69", "70-79", "80-89", "90-99"];
- const relatedConceptsOptions = {
- Facets: [{
- 'caption': 'Vocabulary',
- 'binding': function (o) {
- return o.VOCABULARY_ID;
- }
- }, {
- 'caption': 'Standard Concept',
- 'binding': function (o) {
- return o.STANDARD_CONCEPT_CAPTION;
- }
- }, {
- 'caption': 'Invalid Reason',
- 'binding': function (o) {
- return o.INVALID_REASON_CAPTION;
- }
- }, {
- 'caption': 'Class',
- 'binding': function (o) {
- return o.CONCEPT_CLASS_ID;
- }
- }, {
- 'caption': 'Domain',
- 'binding': function (o) {
- return o.DOMAIN_ID;
- }
- }, {
- 'caption': 'Relationship',
- 'binding': function (o) {
- return o.RELATIONSHIPS.map((val) => val.RELATIONSHIP_NAME);
- },
- isArray: true,
- }, {
- 'caption': 'Has Records',
- 'binding': function (o) {
- return parseInt(o.RECORD_COUNT.toString()
- .replace(',', '')) > 0;
- }
- }, {
- 'caption': 'Has Descendant Records',
- 'binding': function (o) {
- return parseInt(o.DESCENDANT_RECORD_COUNT.toString()
- .replace(',', '')) > 0;
- }
- }, {
- 'caption': 'Distance',
- 'binding': function (o) {
- return Math.max.apply(Math, o.RELATIONSHIPS.map(function (d) {
- return d.RELATIONSHIP_DISTANCE;
- }))
- },
- }]
- };
-
- const getRelatedConceptsColumns = (sharedState) => [{
- title: '',
- render: function (s, p, d) {
- var css = '';
- var icon = 'fa-shopping-cart';
- if (sharedState.selectedConceptsIndex[d.CONCEPT_ID] == 1) {
- css = ' selected';
- }
- return '';
- },
- orderable: false,
- searchable: false
+ const minChartHeight = 300;
+ const treemapGradient = ["#c7eaff", "#6E92A8", "#1F425A"];
+ const defaultDeciles = ["0-9", "10-19", "20-29", "30-39", "40-49", "50-59", "60-69", "70-79", "80-89", "90-99"];
+ const relatedConceptsOptions = {
+ Facets: [{
+ "caption": "Vocabulary",
+ "binding": function (o) {
+ return o.VOCABULARY_ID;
+ }
}, {
- title: 'Id',
- data: 'CONCEPT_ID'
+ "caption": "Standard Concept",
+ "binding": function (o) {
+ return o.STANDARD_CONCEPT_CAPTION;
+ }
}, {
- title: 'Code',
- data: 'CONCEPT_CODE'
+ "caption": "Invalid Reason",
+ "binding": function (o) {
+ return o.INVALID_REASON_CAPTION;
+ }
}, {
- title: 'Name',
- data: 'CONCEPT_NAME',
- render: function (s, p, d) {
- var valid = d.INVALID_REASON_CAPTION == 'Invalid' ? 'invalid' : '';
- return '' + d.CONCEPT_NAME + '';
+ "caption": "Class",
+ "binding": function (o) {
+ return o.CONCEPT_CLASS_ID;
}
}, {
- title: 'Class',
- data: 'CONCEPT_CLASS_ID'
+ "caption": "Domain",
+ "binding": function (o) {
+ return o.DOMAIN_ID;
+ }
+ }, {
+ "caption": "Relationship",
+ "binding": function (o) {
+ return o.RELATIONSHIPS.map((val) => val.RELATIONSHIP_NAME);
+ },
+ isArray: true,
}, {
- title: 'Standard Concept Caption',
- data: 'STANDARD_CONCEPT_CAPTION',
- visible: false
+ "caption": "Has Records",
+ "binding": function (o) {
+ return parseInt(o.RECORD_COUNT.toString()
+ .replace(",", "")) > 0;
+ }
}, {
- title: 'RC',
- data: 'RECORD_COUNT',
- className: 'numeric'
+ "caption": "Has Descendant Records",
+ "binding": function (o) {
+ return parseInt(o.DESCENDANT_RECORD_COUNT.toString()
+ .replace(",", "")) > 0;
+ }
}, {
- title: 'DRC',
- data: 'DESCENDANT_RECORD_COUNT',
- className: 'numeric'
+ "caption": "Distance",
+ "binding": function (o) {
+ return Math.max.apply(Math, o.RELATIONSHIPS.map(function (d) {
+ return d.RELATIONSHIP_DISTANCE;
+ }));
+ },
+ }]
+ };
+
+ const getRelatedConceptsColumns = (sharedState) => [{
+ title: "",
+ render: function (s, p, d) {
+ var css = "";
+ var icon = "fa-shopping-cart";
+ if (sharedState.selectedConceptsIndex[d.CONCEPT_ID] == 1) {
+ css = " selected";
+ }
+ return "";
+ },
+ orderable: false,
+ searchable: false
+ }, {
+ title: "Id",
+ data: "CONCEPT_ID"
+ }, {
+ title: "Code",
+ data: "CONCEPT_CODE"
+ }, {
+ title: "Name",
+ data: "CONCEPT_NAME",
+ render: function (s, p, d) {
+ var valid = d.INVALID_REASON_CAPTION == "Invalid" ? "invalid" : "";
+ return "" + d.CONCEPT_NAME + "";
+ }
+ }, {
+ title: "Class",
+ data: "CONCEPT_CLASS_ID"
+ }, {
+ title: "Standard Concept Caption",
+ data: "STANDARD_CONCEPT_CAPTION",
+ visible: false
+ }, {
+ title: "RC",
+ data: "RECORD_COUNT",
+ className: "numeric"
+ }, {
+ title: "DRC",
+ data: "DESCENDANT_RECORD_COUNT",
+ className: "numeric"
+ }, {
+ title: "Domain",
+ data: "DOMAIN_ID"
+ }, {
+ title: "Vocabulary",
+ data: "VOCABULARY_ID"
+ }, {
+ title: "Ancestor",
+ data: "ANCESTORS"
+ }];
+ const relatedSourcecodesOptions = {
+ Facets: [{
+ "caption": "Vocabulary",
+ "binding": function (o) {
+ return o.VOCABULARY_ID;
+ }
}, {
- title: 'Domain',
- data: 'DOMAIN_ID'
+ "caption": "Invalid Reason",
+ "binding": function (o) {
+ return o.INVALID_REASON_CAPTION;
+ }
}, {
- title: 'Vocabulary',
- data: 'VOCABULARY_ID'
+ "caption": "Class",
+ "binding": function (o) {
+ return o.CONCEPT_CLASS_ID;
+ }
}, {
- title: 'Ancestor',
- data: 'ANCESTORS'
- }];
- const relatedSourcecodesOptions = {
- Facets: [{
- 'caption': 'Vocabulary',
- 'binding': function (o) {
- return o.VOCABULARY_ID;
- }
+ "caption": "Domain",
+ "binding": function (o) {
+ return o.DOMAIN_ID;
+ }
+ }]
+ };
+
+ const metatrix = {
+ "ATC.ATC 4th": {
+ childRelationships: [{
+ name: "Has descendant of",
+ range: [0, 1]
+ }],
+ parentRelationships: [{
+ name: "Has ancestor of",
+ range: [0, 5]
+ }]
+ },
+ "ICD9CM.5-dig billing code": {
+ childRelationships: [{
+ name: "Subsumes",
+ range: [0, 1]
+ }],
+ parentRelationships: [{
+ name: "Is a",
+ range: [0, 1]
+ }]
+ },
+ "ICD9CM.4-dig nonbill code": {
+ childRelationships: [{
+ name: "Subsumes",
+ range: [0, 1]
+ }],
+ parentRelationships: [{
+ name: "Is a",
+ range: [0, 1]
}, {
- 'caption': 'Invalid Reason',
- 'binding': function (o) {
- return o.INVALID_REASON_CAPTION;
- }
+ name: "Non-standard to Standard map (OMOP)",
+ range: [0, 1]
+ }]
+ },
+ "ICD9CM.3-dig nonbill code": {
+ childRelationships: [{
+ name: "Subsumes",
+ range: [0, 1]
+ }],
+ parentRelationships: [{
+ name: "Non-standard to Standard map (OMOP)",
+ range: [0, 999]
+ }]
+ },
+ "RxNorm.Ingredient": {
+ childRelationships: [{
+ name: "Ingredient of (RxNorm)",
+ range: [0, 999]
+ }],
+ parentRelationships: [{
+ name: "Has ancestor of",
+ vocabulary: ["ATC", "ETC"],
+ range: [0, 1]
+ }]
+ },
+ "RxNorm.Brand Name": {
+ childRelationships: [{
+ name: "Ingredient of (RxNorm)",
+ range: [0, 999]
+ }],
+ parentRelationships: [{
+ name: "Tradename of (RxNorm)",
+ range: [0, 999]
+ }]
+ },
+ "RxNorm.Branded Drug": {
+ childRelationships: [{
+ name: "Consists of (RxNorm)",
+ range: [0, 999]
+ }],
+ parentRelationships: [{
+ name: "Has ingredient (RxNorm)",
+ range: [0, 999]
+ }, {
+ name: "RxNorm to ATC (RxNorm)",
+ range: [0, 999]
}, {
- 'caption': 'Class',
- 'binding': function (o) {
- return o.CONCEPT_CLASS_ID;
- }
+ name: "RxNorm to ETC (FDB)",
+ range: [0, 999]
+ }]
+ },
+ "RxNorm.Clinical Drug Comp": {
+ childRelationships: [],
+ parentRelationships: [{
+ name: "Has precise ingredient (RxNorm)",
+ range: [0, 999]
}, {
- 'caption': 'Domain',
- 'binding': function (o) {
- return o.DOMAIN_ID;
- }
+ name: "Has ingredient (RxNorm)",
+ range: [0, 999]
+ }]
+ },
+ "CPT4.CPT4": {
+ childRelationships: [{
+ name: "Has descendant of",
+ range: [0, 1]
+ }],
+ parentRelationships: [{
+ name: "Has ancestor of",
+ range: [0, 1]
}]
- };
+ },
+ "CPT4.CPT4 Hierarchy": {
+ childRelationships: [{
+ name: "Has descendant of",
+ range: [0, 1]
+ }],
+ parentRelationships: [{
+ name: "Has ancestor of",
+ range: [0, 1]
+ }]
+ },
+ "ETC.ETC": {
+ childRelationships: [{
+ name: "Has descendant of",
+ range: [0, 1]
+ }],
+ parentRelationships: [{
+ name: "Has ancestor of",
+ range: [0, 1]
+ }]
+ },
+ "MedDRA.LLT": {
+ childRelationships: [{
+ name: "Has descendant of",
+ range: [0, 1]
+ }],
+ parentRelationships: [{
+ name: "Has ancestor of",
+ range: [0, 1]
+ }]
+ },
+ "MedDRA.PT": {
+ childRelationships: [{
+ name: "Has descendant of",
+ range: [0, 1]
+ }],
+ parentRelationships: [{
+ name: "Has ancestor of",
+ range: [0, 1]
+ }]
+ },
+ "MedDRA.HLT": {
+ childRelationships: [{
+ name: "Has descendant of",
+ range: [0, 1]
+ }],
+ parentRelationships: [{
+ name: "Has ancestor of",
+ range: [0, 1]
+ }]
+ },
+ "MedDRA.SOC": {
+ childRelationships: [{
+ name: "Has descendant of",
+ range: [0, 1]
+ }],
+ parentRelationships: [{
+ name: "Has ancestor of",
+ range: [0, 1]
+ }]
+ },
+ "MedDRA.HLGT": {
+ childRelationships: [{
+ name: "Has descendant of",
+ range: [0, 1]
+ }],
+ parentRelationships: [{
+ name: "Has ancestor of",
+ range: [0, 1]
+ }]
+ },
+ "SNOMED.Clinical Finding": {
+ childRelationships: [{
+ name: "Has descendant of",
+ range: [0, 1]
+ }],
+ parentRelationships: [{
+ name: "Has ancestor of",
+ range: [0, 1]
+ }]
+ },
+ "SNOMED.Procedure": {
+ childRelationships: [{
+ name: "Has descendant of",
+ range: [0, 1]
+ }],
+ parentRelationships: [{
+ name: "Has ancestor of",
+ range: [0, 1]
+ }]
+ }
+ };
- const metatrix = {
- 'ATC.ATC 4th': {
- childRelationships: [{
- name: 'Has descendant of',
- range: [0, 1]
- }],
- parentRelationships: [{
- name: 'Has ancestor of',
- range: [0, 5]
- }]
- },
- 'ICD9CM.5-dig billing code': {
- childRelationships: [{
- name: 'Subsumes',
- range: [0, 1]
- }],
- parentRelationships: [{
- name: 'Is a',
- range: [0, 1]
- }]
- },
- 'ICD9CM.4-dig nonbill code': {
- childRelationships: [{
- name: 'Subsumes',
- range: [0, 1]
- }],
- parentRelationships: [{
- name: 'Is a',
- range: [0, 1]
- }, {
- name: 'Non-standard to Standard map (OMOP)',
- range: [0, 1]
- }]
- },
- 'ICD9CM.3-dig nonbill code': {
- childRelationships: [{
- name: 'Subsumes',
- range: [0, 1]
- }],
- parentRelationships: [{
- name: 'Non-standard to Standard map (OMOP)',
- range: [0, 999]
- }]
- },
- 'RxNorm.Ingredient': {
- childRelationships: [{
- name: 'Ingredient of (RxNorm)',
- range: [0, 999]
- }],
- parentRelationships: [{
- name: 'Has ancestor of',
- vocabulary: ['ATC', 'ETC'],
- range: [0, 1]
- }]
- },
- 'RxNorm.Brand Name': {
- childRelationships: [{
- name: 'Ingredient of (RxNorm)',
- range: [0, 999]
- }],
- parentRelationships: [{
- name: 'Tradename of (RxNorm)',
- range: [0, 999]
- }]
- },
- 'RxNorm.Branded Drug': {
- childRelationships: [{
- name: 'Consists of (RxNorm)',
- range: [0, 999]
- }],
- parentRelationships: [{
- name: 'Has ingredient (RxNorm)',
- range: [0, 999]
- }, {
- name: 'RxNorm to ATC (RxNorm)',
- range: [0, 999]
- }, {
- name: 'RxNorm to ETC (FDB)',
- range: [0, 999]
- }]
- },
- 'RxNorm.Clinical Drug Comp': {
- childRelationships: [],
- parentRelationships: [{
- name: 'Has precise ingredient (RxNorm)',
- range: [0, 999]
- }, {
- name: 'Has ingredient (RxNorm)',
- range: [0, 999]
- }]
- },
- 'CPT4.CPT4': {
- childRelationships: [{
- name: 'Has descendant of',
- range: [0, 1]
- }],
- parentRelationships: [{
- name: 'Has ancestor of',
- range: [0, 1]
- }]
- },
- 'CPT4.CPT4 Hierarchy': {
- childRelationships: [{
- name: 'Has descendant of',
- range: [0, 1]
- }],
- parentRelationships: [{
- name: 'Has ancestor of',
- range: [0, 1]
- }]
- },
- 'ETC.ETC': {
- childRelationships: [{
- name: 'Has descendant of',
- range: [0, 1]
- }],
- parentRelationships: [{
- name: 'Has ancestor of',
- range: [0, 1]
- }]
- },
- 'MedDRA.LLT': {
- childRelationships: [{
- name: 'Has descendant of',
- range: [0, 1]
- }],
- parentRelationships: [{
- name: 'Has ancestor of',
- range: [0, 1]
- }]
- },
- 'MedDRA.PT': {
- childRelationships: [{
- name: 'Has descendant of',
- range: [0, 1]
- }],
- parentRelationships: [{
- name: 'Has ancestor of',
- range: [0, 1]
- }]
- },
- 'MedDRA.HLT': {
- childRelationships: [{
- name: 'Has descendant of',
- range: [0, 1]
- }],
- parentRelationships: [{
- name: 'Has ancestor of',
- range: [0, 1]
- }]
- },
- 'MedDRA.SOC': {
- childRelationships: [{
- name: 'Has descendant of',
- range: [0, 1]
- }],
- parentRelationships: [{
- name: 'Has ancestor of',
- range: [0, 1]
- }]
- },
- 'MedDRA.HLGT': {
- childRelationships: [{
- name: 'Has descendant of',
- range: [0, 1]
- }],
- parentRelationships: [{
- name: 'Has ancestor of',
- range: [0, 1]
- }]
- },
- 'SNOMED.Clinical Finding': {
- childRelationships: [{
- name: 'Has descendant of',
- range: [0, 1]
- }],
- parentRelationships: [{
- name: 'Has ancestor of',
- range: [0, 1]
- }]
- },
- 'SNOMED.Procedure': {
- childRelationships: [{
- name: 'Has descendant of',
- range: [0, 1]
- }],
- parentRelationships: [{
- name: 'Has ancestor of',
- range: [0, 1]
- }]
+ const getRelatedSourcecodesColumns = (sharedState, context) => [{
+ title: "",
+ render: (s, p, d) => {
+ var css = "";
+ var icon = "fa-shopping-cart";
+ var tag = "i";
+ if (sharedState.selectedConceptsIndex[d.CONCEPT_ID] == 1) {
+ css = " selected";
}
- };
-
- const getRelatedSourcecodesColumns = (sharedState, context) => [{
- title: '',
- render: (s, p, d) => {
- var css = '';
- var icon = 'fa-shopping-cart';
- var tag = 'i'
- if (sharedState.selectedConceptsIndex[d.CONCEPT_ID] == 1) {
- css = ' selected';
- }
- if (!context.canEditCurrentConceptSet()) {
- css += ' readonly';
- tag = 'span';
- }
- return '<' + tag + ' class="fa ' + icon + ' ' + css + '">';
- },
- orderable: false,
- searchable: false
- }, {
- title: 'Id',
- data: 'CONCEPT_ID'
- }, {
- title: 'Code',
- data: 'CONCEPT_CODE'
- }, {
- title: 'Name',
- data: 'CONCEPT_NAME',
- render: function (s, p, d) {
- var valid = d.INVALID_REASON_CAPTION == 'Invalid' ? 'invalid' : '';
- return '' + d.CONCEPT_NAME + '';
+ if (!context.canEditCurrentConceptSet()) {
+ css += " readonly";
+ tag = "span";
}
- }, {
- title: 'Class',
- data: 'CONCEPT_CLASS_ID'
- }, {
- title: 'Standard Concept Caption',
- data: 'STANDARD_CONCEPT_CAPTION',
- visible: false
- }, {
- title: 'Domain',
- data: 'DOMAIN_ID'
- }, {
- title: 'Vocabulary',
- data: 'VOCABULARY_ID'
- }];
+ return "<" + tag + " class=\"fa " + icon + " " + css + "\">";
+ },
+ orderable: false,
+ searchable: false
+ }, {
+ title: "Id",
+ data: "CONCEPT_ID"
+ }, {
+ title: "Code",
+ data: "CONCEPT_CODE"
+ }, {
+ title: "Name",
+ data: "CONCEPT_NAME",
+ render: function (s, p, d) {
+ var valid = d.INVALID_REASON_CAPTION == "Invalid" ? "invalid" : "";
+ return "" + d.CONCEPT_NAME + "";
+ }
+ }, {
+ title: "Class",
+ data: "CONCEPT_CLASS_ID"
+ }, {
+ title: "Standard Concept Caption",
+ data: "STANDARD_CONCEPT_CAPTION",
+ visible: false
+ }, {
+ title: "Domain",
+ data: "DOMAIN_ID"
+ }, {
+ title: "Vocabulary",
+ data: "VOCABULARY_ID"
+ }];
+
+ const apiPaths = {
+ role: (id = "") => `${config.api.url}role/${id}`,
+ roleUsers: roleId => `${config.api.url}role/${roleId}/users`,
+ permissions: () => `${config.api.url}permission`,
+ rolePermissions: roleId => `${config.api.url}role/${roleId}/permissions`,
+ relations: (roleId, relation, ids = []) => `${config.api.url}role/${roleId}/${relation}/${ids.join("+")}`,
+ jobs: () => `${config.api.url}job/execution?comprehensivePage=true`,
+ job: (id) => `${config.api.url}job/${id}`,
+ jobByName: (name, type) => `${config.api.url}job/type/${type}/name/${name}`,
+ };
- const apiPaths = {
- role: (id = '') => `${config.api.url}role/${id}`,
- roleUsers: roleId => `${config.api.url}role/${roleId}/users`,
- permissions: () => `${config.api.url}permission`,
- rolePermissions: roleId => `${config.api.url}role/${roleId}/permissions`,
- relations: (roleId, relation, ids = []) => `${config.api.url}role/${roleId}/${relation}/${ids.join('+')}`,
- jobs: () => `${config.api.url}job/execution?comprehensivePage=true`,
- job: (id) => `${config.api.url}job/${id}`,
- jobByName: (name, type) => `${config.api.url}job/type/${type}/name/${name}`,
- };
+ const applicationStatuses = {
+ initializing: "initializing",
+ running: "running",
+ noSourcesAvailable: "no-sources-available",
+ failed: "failed",
+ };
- const applicationStatuses = {
- initializing: 'initializing',
- running: 'running',
- noSourcesAvailable: 'no-sources-available',
- failed: 'failed',
- };
-
- return {
- minChartHeight,
- treemapGradient,
- defaultDeciles,
- relatedConceptsOptions,
- getRelatedConceptsColumns,
- relatedSourcecodesOptions,
- metatrix,
- getRelatedSourcecodesColumns,
- apiPaths,
- applicationStatuses,
- };
- }
-);
\ No newline at end of file
+ return {
+ minChartHeight,
+ treemapGradient,
+ defaultDeciles,
+ relatedConceptsOptions,
+ getRelatedConceptsColumns,
+ relatedSourcecodesOptions,
+ metatrix,
+ getRelatedSourcecodesColumns,
+ apiPaths,
+ applicationStatuses,
+ };
+}
+);
diff --git a/js/settings.js b/js/settings.js
index 89c06f3ce..5a3259db8 100644
--- a/js/settings.js
+++ b/js/settings.js
@@ -1,5 +1,5 @@
const settingsObject = {
- baseUrl: 'js',
+ baseUrl: "js",
config: {
text: {
useXhr: function (url, protocol, hostname, port) {
@@ -8,65 +8,65 @@ const settingsObject = {
},
},
packages: [{
- name: "databindings",
- location: "extensions/bindings"
- },
- {
- name: "cohortdefinitionviewer",
- location: "components/cohortdefinitionviewer"
- },
- {
- name: "circe",
- location: "components/circe"
- },
- {
- name: "cyclops",
- location: "components/cyclops"
- },
- {
- name: "evidence",
- location: "components/evidence"
- },
- {
- name: "extenders",
- location: "extenders"
- },
- {
- name: "featureextraction",
- location: "components/featureextraction"
- },
- {
- name: "pages",
- location: "pages",
- },
- {
- name: "lodash",
- location: "../node_modules/lodash",
- main: "lodash",
- },
- {
- name: "urijs",
- location: "../node_modules/urijs/src",
- main: "URI"
- },
- {
- name: "facets",
- location: "../node_modules/facets",
- main: "facets"
- },
- {
- name: "bootstrap-datetimepicker.css",
- location: "../node_modules/bootstrap-datetimepicker/src/less",
- main: "less!bootstrap-datetimepicker.less",
- },
+ name: "databindings",
+ location: "extensions/bindings"
+ },
+ {
+ name: "cohortdefinitionviewer",
+ location: "components/cohortdefinitionviewer"
+ },
+ {
+ name: "circe",
+ location: "components/circe"
+ },
+ {
+ name: "cyclops",
+ location: "components/cyclops"
+ },
+ {
+ name: "evidence",
+ location: "components/evidence"
+ },
+ {
+ name: "extenders",
+ location: "extenders"
+ },
+ {
+ name: "featureextraction",
+ location: "components/featureextraction"
+ },
+ {
+ name: "pages",
+ location: "pages",
+ },
+ {
+ name: "lodash",
+ location: "../node_modules/lodash",
+ main: "lodash",
+ },
+ {
+ name: "urijs",
+ location: "../node_modules/urijs/src",
+ main: "URI"
+ },
+ {
+ name: "facets",
+ location: "../node_modules/facets",
+ main: "facets"
+ },
+ {
+ name: "bootstrap-datetimepicker.css",
+ location: "../node_modules/bootstrap-datetimepicker/src/less",
+ main: "less!bootstrap-datetimepicker.less",
+ },
],
shim: {
"colorbrewer": {
- exports: 'colorbrewer'
+ exports: "colorbrewer"
},
"bootstrap": {
"deps": [
- 'jquery'
+ "jquery"
]
},
"prism": {
@@ -80,13 +80,13 @@ const settingsObject = {
},
map: {
"*": {
- 'jqueryui/jquery.ddslick': 'assets/jqueryui/jquery.ddslick',
- 'jqueryui/autoGrowInput': 'assets/jqueryui/autoGrowInput',
- 'd3-color': 'd3',
- 'd3-interpolate': 'd3',
- 'd3-selection': 'd3',
- 'd3-collection': 'd3',
- 'services/VocabularyProvider': 'services/Vocabulary'
+ "jqueryui/jquery.ddslick": "assets/jqueryui/jquery.ddslick",
+ "jqueryui/autoGrowInput": "assets/jqueryui/autoGrowInput",
+ "d3-color": "d3",
+ "d3-interpolate": "d3",
+ "d3-selection": "d3",
+ "d3-collection": "d3",
+ "services/VocabularyProvider": "services/Vocabulary"
}
},
paths: {
@@ -177,8 +177,8 @@ const settingsObject = {
},
};
-if (typeof define !== 'undefined') {
+if (typeof define !== "undefined") {
define(() => settingsObject);
} else {
module.exports = settingsObject;
-}
\ No newline at end of file
+}
diff --git a/package.json b/package.json
index 5b70cdadd..1d91a4948 100644
--- a/package.json
+++ b/package.json
@@ -35,6 +35,8 @@
"@babel/plugin-proposal-object-rest-spread": "^7.0.0",
"@babel/polyfill": "^7.0.0",
"@babel/preset-env": "^7.1.5",
+ "babel-eslint": "^10.0.1",
+ "eslint": "^5.12.0",
"esprima": "^4.0.1",
"html-document": "^0.8.1",
"requirejs": "^2.3.4",
@@ -57,6 +59,7 @@
"datatables.net": "^1.10.15",
"datatables.net-buttons": "^1.5.4",
"director": "^1.2.8",
+ "eslint-plugin-requirejs": "^3.2.0",
"facets": "^0.1.1",
"file-saver": "^1.3.8",
"jquery": "^1.11.2",