From 3200ffb3b00800bcd43256313b0d6ad9707d76eb Mon Sep 17 00:00:00 2001
From: Barney Laurance <barney@thebiggive.org.uk>
Date: Sat, 2 Dec 2023 09:53:48 +0000
Subject: [PATCH 01/11] 484: Add warning about Psalm baseline to readme

---
 README.md | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/README.md b/README.md
index d289d39d..dcce2a1c 100644
--- a/README.md
+++ b/README.md
@@ -25,6 +25,11 @@ composer require --dev roave/infection-static-analysis-plugin
 vendor/bin/roave-infection-static-analysis-plugin
 ```
 
+Do not use this tool if your project has a 
+[Psalm baseline](https://psalm.dev/docs/running_psalm/dealing_with_code_issues/#using-a-baseline-file) file. In that
+case issues that are ignored due to being present in the baseline will be reported as killed, spuriously inflating your 
+mutation score indicator. See [issue #484](https://github.com/Roave/infection-static-analysis-plugin/issues/484).
+
 ### Configuration
 
 The `roave-infection-static-analysis-plugin` binary accepts all of `infection` flags and arguments, and an additional `--psalm-config` argument.

From b303463a9a0d76c5bba5b7021612e27891c06fbd Mon Sep 17 00:00:00 2001
From: Barney Laurance <barney@thebiggive.org.uk>
Date: Sat, 2 Dec 2023 11:03:46 +0000
Subject: [PATCH 02/11] 484: Add functional test to show how a high MSI is
 reported when Psalm issues exist in baseline

---
 .gitignore                                    |  1 +
 .../asset/ProjectWithPsalmBaseline/.gitignore |  1 +
 .../ProjectWithPsalmBaseline/composer.json    | 25 ++++++++++++++
 .../ProjectWithPsalmBaseline/infection.html   | 19 +++++++++++
 .../ProjectWithPsalmBaseline/infection.json5  | 11 +++++++
 .../ProjectWithPsalmBaseline/phpunit.xml      | 23 +++++++++++++
 .../psalm-baseline.xml                        | 17 ++++++++++
 test/asset/ProjectWithPsalmBaseline/psalm.xml | 18 ++++++++++
 .../src/HelloWorld.php                        | 19 +++++++++++
 .../tests/HelloWorldTest.php                  | 17 ++++++++++
 .../ProjectWithBaselineTest.php               | 33 +++++++++++++++++++
 11 files changed, 184 insertions(+)
 create mode 100644 test/asset/ProjectWithPsalmBaseline/.gitignore
 create mode 100644 test/asset/ProjectWithPsalmBaseline/composer.json
 create mode 100644 test/asset/ProjectWithPsalmBaseline/infection.html
 create mode 100644 test/asset/ProjectWithPsalmBaseline/infection.json5
 create mode 100644 test/asset/ProjectWithPsalmBaseline/phpunit.xml
 create mode 100644 test/asset/ProjectWithPsalmBaseline/psalm-baseline.xml
 create mode 100644 test/asset/ProjectWithPsalmBaseline/psalm.xml
 create mode 100644 test/asset/ProjectWithPsalmBaseline/src/HelloWorld.php
 create mode 100644 test/asset/ProjectWithPsalmBaseline/tests/HelloWorldTest.php
 create mode 100644 test/unit/Roave/InfectionStaticAnalysisTest/ProjectWithBaselineTest.php

diff --git a/.gitignore b/.gitignore
index cfe2b239..abc36b89 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,3 +1,4 @@
 .phpcs-cache
 .phpunit.result.cache
 vendor
+composer.lock
diff --git a/test/asset/ProjectWithPsalmBaseline/.gitignore b/test/asset/ProjectWithPsalmBaseline/.gitignore
new file mode 100644
index 00000000..723504e3
--- /dev/null
+++ b/test/asset/ProjectWithPsalmBaseline/.gitignore
@@ -0,0 +1 @@
+.phpunit.cache
diff --git a/test/asset/ProjectWithPsalmBaseline/composer.json b/test/asset/ProjectWithPsalmBaseline/composer.json
new file mode 100644
index 00000000..35935c11
--- /dev/null
+++ b/test/asset/ProjectWithPsalmBaseline/composer.json
@@ -0,0 +1,25 @@
+{
+    "name": "acme/project-with-psalm-baseline",
+    "description": "Example hellow world app that uses a Psalm baseline",
+    "type": "project",
+    "autoload": {
+        "psr-4": {
+            "Acme\\ProjectWithPsalmBaseline\\": "src/"
+        }
+
+    },
+    "_comment": "Depending on the published version of ISAP is not great here, we should be testing against the version that exists locally. I had trouble getting that to work.",
+    "require-dev": {
+        "vimeo/psalm": "^5.16",
+        "phpunit/phpunit": "^10.5.1",
+        "roave/infection-static-analysis-plugin": "*"
+    },
+    "config": {
+        "platform": {
+            "php": "8.1.99"
+        },
+        "allow-plugins": {
+            "infection/extension-installer": true
+        }
+    }
+}
diff --git a/test/asset/ProjectWithPsalmBaseline/infection.html b/test/asset/ProjectWithPsalmBaseline/infection.html
new file mode 100644
index 00000000..14362f3d
--- /dev/null
+++ b/test/asset/ProjectWithPsalmBaseline/infection.html
@@ -0,0 +1,19 @@
+<!DOCTYPE html>
+<html>
+    <body>
+        <a href="/">Back</a>
+        <mutation-test-report-app title-postfix="Infection"></mutation-test-report-app>
+        <script defer src="https://cdn.jsdelivr.net/npm/mutation-testing-elements/dist/mutation-test-elements.js"></script>
+        <script>
+            const app = document.getElementsByTagName('mutation-test-report-app').item(0);
+            function updateTheme() {
+                document.body.style.backgroundColor = app.themeBackgroundColor;
+            }
+            app.addEventListener('theme-changed', updateTheme);
+            updateTheme();
+
+            document.getElementsByTagName('mutation-test-report-app').item(0).report = {"schemaVersion":"1","thresholds":{"high":90,"low":50},"files":{"\/home\/barney\/projects\/infection-static-analysis-plugin\/test\/asset\/ProjectWithPsalmBaseline\/src\/HelloWorld.php":{"language":"php","source":"<?php\n\nnamespace Acme\\ProjectWithPsalmBaseline;\n\n\/**\n * @psalm-api\n *\/\nclass HelloWorld\n{\n    public function takesImplictMixedReturnsIntAndIsCoveredByBaseline($mixture): int\n    {\n        return $mixture + 2;\n    }\n}","mutants":[{"id":"02f41da03e0e7d96b88d606098db1fb5","mutatorName":"PublicVisibility","replacement":"protected function takesImplictMixedReturnsIntAndIsCoveredByBaseline($mixture) : int","description":"Replaces the `public` method visibility keyword with `protected`.","location":{"start":{"line":10,"column":5},"end":{"line":10,"column":85}},"status":"Killed","statusReason":"PHPUnit 10.5.1 by Sebastian Bergmann and contributors.\n\nRuntime:       PHP 8.1.12-1ubuntu4.3\nConfiguration: \/tmp\/infection\/phpunitConfiguration.02f41da03e0e7d96b88d606098db1fb5.infection.xml\n\nE                                                                   1 \/ 1 (100%)\n\nTime: 00:00.004, Memory: 12.00 MB\n\nThere was 1 error:\n\n1) HelloWorldTest::testNothingButProvideCoverage\nError: Call to protected method Acme\\ProjectWithPsalmBaseline\\HelloWorld::takesImplictMixedReturnsIntAndIsCoveredByBaseline() from scope HelloWorldTest\n\n\/home\/barney\/projects\/infection-static-analysis-plugin\/test\/asset\/ProjectWithPsalmBaseline\/tests\/HelloWorldTest.php:13\n\nERRORS!\nTests: 1, Assertions: 0, Errors: 1.","coveredBy":["97ea2e5ee1e0a71c3f2a240c57ba2162"],"killedBy":["97ea2e5ee1e0a71c3f2a240c57ba2162"],"testsCompleted":1},{"id":"362c892a8ec7d8782c4427adbed5607c","mutatorName":"DecrementInteger","replacement":"return $mixture + 1;","description":"Decrements an integer value with 1.","location":{"start":{"line":12,"column":9},"end":{"line":12,"column":29}},"status":"Killed","statusReason":"PHPUnit 10.5.1 by Sebastian Bergmann and contributors.\n\nRuntime:       PHP 8.1.12-1ubuntu4.3\nConfiguration: \/tmp\/infection\/phpunitConfiguration.362c892a8ec7d8782c4427adbed5607c.infection.xml\n\n.                                                                   1 \/ 1 (100%)\n\nTime: 00:00.002, Memory: 10.00 MB\n\nOK (1 test, 1 assertion)","coveredBy":["97ea2e5ee1e0a71c3f2a240c57ba2162"],"killedBy":[],"testsCompleted":0},{"id":"d136f1faa27eac8c072f6e8070be3e14","mutatorName":"IncrementInteger","replacement":"return $mixture + 3;","description":"Increments an integer value with 1.","location":{"start":{"line":12,"column":9},"end":{"line":12,"column":29}},"status":"Killed","statusReason":"PHPUnit 10.5.1 by Sebastian Bergmann and contributors.\n\nRuntime:       PHP 8.1.12-1ubuntu4.3\nConfiguration: \/tmp\/infection\/phpunitConfiguration.d136f1faa27eac8c072f6e8070be3e14.infection.xml\n\n.                                                                   1 \/ 1 (100%)\n\nTime: 00:00.002, Memory: 10.00 MB\n\nOK (1 test, 1 assertion)","coveredBy":["97ea2e5ee1e0a71c3f2a240c57ba2162"],"killedBy":[],"testsCompleted":0},{"id":"ddf10fadb3cfffee67afdf0813d4a1a7","mutatorName":"Plus","replacement":"return $mixture - 2;","description":"Replaces an addition operator (`+`) with a subtraction operator (`-`).","location":{"start":{"line":12,"column":9},"end":{"line":12,"column":29}},"status":"Killed","statusReason":"PHPUnit 10.5.1 by Sebastian Bergmann and contributors.\n\nRuntime:       PHP 8.1.12-1ubuntu4.3\nConfiguration: \/tmp\/infection\/phpunitConfiguration.ddf10fadb3cfffee67afdf0813d4a1a7.infection.xml\n\n.                                                                   1 \/ 1 (100%)\n\nTime: 00:00.002, Memory: 10.00 MB\n\nOK (1 test, 1 assertion)","coveredBy":["97ea2e5ee1e0a71c3f2a240c57ba2162"],"killedBy":[],"testsCompleted":0}]}},"testFiles":{"\/home\/barney\/projects\/infection-static-analysis-plugin\/test\/asset\/ProjectWithPsalmBaseline\/tests\/HelloWorldTest.php":{"tests":[{"id":"97ea2e5ee1e0a71c3f2a240c57ba2162","name":"HelloWorldTest::testNothingButProvideCoverage"}]}},"framework":{"name":"Infection","branding":{"homepageUrl":"https:\/\/infection.github.io\/","imageUrl":"https:\/\/infection.github.io\/images\/logo.png"}}}
+            ;
+        </script>
+    </body>
+</html>
\ No newline at end of file
diff --git a/test/asset/ProjectWithPsalmBaseline/infection.json5 b/test/asset/ProjectWithPsalmBaseline/infection.json5
new file mode 100644
index 00000000..ca97ca21
--- /dev/null
+++ b/test/asset/ProjectWithPsalmBaseline/infection.json5
@@ -0,0 +1,11 @@
+{
+    "$schema": "vendor/infection/infection/resources/schema.json",
+    "source": {
+        "directories": [
+            "src"
+        ]
+    },
+    "mutators": {
+        "@default": true
+    }
+}
\ No newline at end of file
diff --git a/test/asset/ProjectWithPsalmBaseline/phpunit.xml b/test/asset/ProjectWithPsalmBaseline/phpunit.xml
new file mode 100644
index 00000000..04d743b7
--- /dev/null
+++ b/test/asset/ProjectWithPsalmBaseline/phpunit.xml
@@ -0,0 +1,23 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<phpunit xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+         xsi:noNamespaceSchemaLocation="https://schema.phpunit.de/10.5/phpunit.xsd"
+         bootstrap="vendor/autoload.php"
+         cacheDirectory=".phpunit.cache"
+         executionOrder="depends,defects"
+         requireCoverageMetadata="true"
+         beStrictAboutCoverageMetadata="true"
+         beStrictAboutOutputDuringTests="true"
+         failOnRisky="true"
+         failOnWarning="true">
+    <testsuites>
+        <testsuite name="default">
+            <directory>tests</directory>
+        </testsuite>
+    </testsuites>
+
+    <source restrictDeprecations="true" restrictNotices="true" restrictWarnings="true">
+        <include>
+            <directory>src</directory>
+        </include>
+    </source>
+</phpunit>
diff --git a/test/asset/ProjectWithPsalmBaseline/psalm-baseline.xml b/test/asset/ProjectWithPsalmBaseline/psalm-baseline.xml
new file mode 100644
index 00000000..b73d400b
--- /dev/null
+++ b/test/asset/ProjectWithPsalmBaseline/psalm-baseline.xml
@@ -0,0 +1,17 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<files psalm-version="5.16.0@2897ba636551a8cb61601cc26f6ccfbba6c36591">
+  <file src="src/HelloWorld.php">
+    <MissingParamType>
+      <code>$mixture</code>
+    </MissingParamType>
+    <MixedInferredReturnType>
+      <code>int</code>
+    </MixedInferredReturnType>
+    <MixedOperand>
+      <code>$mixture</code>
+    </MixedOperand>
+    <MixedReturnStatement>
+      <code>$mixture + 2</code>
+    </MixedReturnStatement>
+  </file>
+</files>
diff --git a/test/asset/ProjectWithPsalmBaseline/psalm.xml b/test/asset/ProjectWithPsalmBaseline/psalm.xml
new file mode 100644
index 00000000..4ada57ec
--- /dev/null
+++ b/test/asset/ProjectWithPsalmBaseline/psalm.xml
@@ -0,0 +1,18 @@
+<?xml version="1.0"?>
+<psalm
+    errorLevel="1"
+    resolveFromConfigFile="true"
+    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+    xmlns="https://getpsalm.org/schema/config"
+    xsi:schemaLocation="https://getpsalm.org/schema/config vendor/vimeo/psalm/config.xsd"
+    findUnusedBaselineEntry="true"
+    findUnusedCode="true"
+    errorBaseline="psalm-baseline.xml"
+>
+    <projectFiles>
+        <directory name="src" />
+        <ignoreFiles>
+            <directory name="vendor" />
+        </ignoreFiles>
+    </projectFiles>
+</psalm>
diff --git a/test/asset/ProjectWithPsalmBaseline/src/HelloWorld.php b/test/asset/ProjectWithPsalmBaseline/src/HelloWorld.php
new file mode 100644
index 00000000..86a154b9
--- /dev/null
+++ b/test/asset/ProjectWithPsalmBaseline/src/HelloWorld.php
@@ -0,0 +1,19 @@
+<?php
+
+namespace Acme\ProjectWithPsalmBaseline;
+
+/**
+ * @psalm-api
+ */
+class HelloWorld
+{
+    /**
+     * This function has full test coverage, but the test is effectively assertion-free and useless. But
+     * because the function also has Psalm errors that are in the baseline, ISAP will think the test is good
+     * and give us a 100% MSI.
+     */
+    public function takesImplictMixedReturnsIntAndIsCoveredByBaseline($mixture): int
+    {
+        return $mixture + 2;
+    }
+}
\ No newline at end of file
diff --git a/test/asset/ProjectWithPsalmBaseline/tests/HelloWorldTest.php b/test/asset/ProjectWithPsalmBaseline/tests/HelloWorldTest.php
new file mode 100644
index 00000000..57293fc3
--- /dev/null
+++ b/test/asset/ProjectWithPsalmBaseline/tests/HelloWorldTest.php
@@ -0,0 +1,17 @@
+<?php
+
+use Acme\ProjectWithPsalmBaseline\HelloWorld;
+
+/**
+ * @covers \Acme\ProjectWithPsalmBaseline\HelloWorld
+ */
+class HelloWorldTest extends \PHPUnit\Framework\TestCase
+{
+    public function testNothingButProvideCoverage(): void
+    {
+        $sut = new HelloWorld();
+        $_resultWeDontCheck = $sut->takesImplictMixedReturnsIntAndIsCoveredByBaseline(3);
+
+        $this->assertSame(4, 2+2);
+    }
+}
\ No newline at end of file
diff --git a/test/unit/Roave/InfectionStaticAnalysisTest/ProjectWithBaselineTest.php b/test/unit/Roave/InfectionStaticAnalysisTest/ProjectWithBaselineTest.php
new file mode 100644
index 00000000..a2520271
--- /dev/null
+++ b/test/unit/Roave/InfectionStaticAnalysisTest/ProjectWithBaselineTest.php
@@ -0,0 +1,33 @@
+<?php
+
+declare(strict_types=1);
+
+namespace Roave\InfectionStaticAnalysisTest;
+
+use PHPUnit\Framework\TestCase;
+use Symfony\Component\Process\Process;
+
+class ProjectWithBaselineTest extends TestCase
+{
+    public function setUp(): void
+    {
+        $process = new Process(['composer', 'update']);
+        $process->setWorkingDirectory(__DIR__ . '/../../../asset/ProjectWithPsalmBaseline');
+
+        $process->run();
+    }
+
+    public function testItSpuriouslyReportsMutantAsKilledWithPsalmBaseline(): void
+    {
+        $process = new Process([__DIR__ . '/../../../asset/ProjectWithPsalmBaseline/vendor/bin/roave-infection-static-analysis-plugin']);
+        $process->setWorkingDirectory(__DIR__ . '/../../../asset/ProjectWithPsalmBaseline');
+
+        $process->run();
+
+        $output = $process->getOutput();
+
+        $this->assertSame(0, $process->getExitCode());
+        $this->assertStringContainsString('4 mutants were killed', $output);
+        $this->assertStringContainsString('Mutation Score Indicator (MSI): 100%', $output);
+    }
+}

From 2c50c7c55d188f4c45c6f8c929c1408290ab3585 Mon Sep 17 00:00:00 2001
From: Barney Laurance <barney@thebiggive.org.uk>
Date: Sat, 2 Dec 2023 15:26:03 +0000
Subject: [PATCH 03/11] 484: Commit composer.lock inside test asset

---
 .gitignore                                    |    3 +-
 .../ProjectWithPsalmBaseline/composer.lock    | 4579 +++++++++++++++++
 .../ProjectWithBaselineTest.php               |    2 +-
 3 files changed, 4581 insertions(+), 3 deletions(-)
 create mode 100644 test/asset/ProjectWithPsalmBaseline/composer.lock

diff --git a/.gitignore b/.gitignore
index abc36b89..c9789f99 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,4 +1,3 @@
 .phpcs-cache
 .phpunit.result.cache
-vendor
-composer.lock
+vendor
\ No newline at end of file
diff --git a/test/asset/ProjectWithPsalmBaseline/composer.lock b/test/asset/ProjectWithPsalmBaseline/composer.lock
new file mode 100644
index 00000000..da1fef45
--- /dev/null
+++ b/test/asset/ProjectWithPsalmBaseline/composer.lock
@@ -0,0 +1,4579 @@
+{
+    "_readme": [
+        "This file locks the dependencies of your project to a known state",
+        "Read more about it at https://getcomposer.org/doc/01-basic-usage.md#installing-dependencies",
+        "This file is @generated automatically"
+    ],
+    "content-hash": "05af455f949ae14d11ac67a758e251c2",
+    "packages": [],
+    "packages-dev": [
+        {
+            "name": "amphp/amp",
+            "version": "v2.6.2",
+            "source": {
+                "type": "git",
+                "url": "https://github.com/amphp/amp.git",
+                "reference": "9d5100cebffa729aaffecd3ad25dc5aeea4f13bb"
+            },
+            "dist": {
+                "type": "zip",
+                "url": "https://api.github.com/repos/amphp/amp/zipball/9d5100cebffa729aaffecd3ad25dc5aeea4f13bb",
+                "reference": "9d5100cebffa729aaffecd3ad25dc5aeea4f13bb",
+                "shasum": ""
+            },
+            "require": {
+                "php": ">=7.1"
+            },
+            "require-dev": {
+                "amphp/php-cs-fixer-config": "dev-master",
+                "amphp/phpunit-util": "^1",
+                "ext-json": "*",
+                "jetbrains/phpstorm-stubs": "^2019.3",
+                "phpunit/phpunit": "^7 | ^8 | ^9",
+                "psalm/phar": "^3.11@dev",
+                "react/promise": "^2"
+            },
+            "type": "library",
+            "extra": {
+                "branch-alias": {
+                    "dev-master": "2.x-dev"
+                }
+            },
+            "autoload": {
+                "files": [
+                    "lib/functions.php",
+                    "lib/Internal/functions.php"
+                ],
+                "psr-4": {
+                    "Amp\\": "lib"
+                }
+            },
+            "notification-url": "https://packagist.org/downloads/",
+            "license": [
+                "MIT"
+            ],
+            "authors": [
+                {
+                    "name": "Daniel Lowrey",
+                    "email": "rdlowrey@php.net"
+                },
+                {
+                    "name": "Aaron Piotrowski",
+                    "email": "aaron@trowski.com"
+                },
+                {
+                    "name": "Bob Weinand",
+                    "email": "bobwei9@hotmail.com"
+                },
+                {
+                    "name": "Niklas Keller",
+                    "email": "me@kelunik.com"
+                }
+            ],
+            "description": "A non-blocking concurrency framework for PHP applications.",
+            "homepage": "https://amphp.org/amp",
+            "keywords": [
+                "async",
+                "asynchronous",
+                "awaitable",
+                "concurrency",
+                "event",
+                "event-loop",
+                "future",
+                "non-blocking",
+                "promise"
+            ],
+            "support": {
+                "irc": "irc://irc.freenode.org/amphp",
+                "issues": "https://github.com/amphp/amp/issues",
+                "source": "https://github.com/amphp/amp/tree/v2.6.2"
+            },
+            "funding": [
+                {
+                    "url": "https://github.com/amphp",
+                    "type": "github"
+                }
+            ],
+            "time": "2022-02-20T17:52:18+00:00"
+        },
+        {
+            "name": "amphp/byte-stream",
+            "version": "v1.8.1",
+            "source": {
+                "type": "git",
+                "url": "https://github.com/amphp/byte-stream.git",
+                "reference": "acbd8002b3536485c997c4e019206b3f10ca15bd"
+            },
+            "dist": {
+                "type": "zip",
+                "url": "https://api.github.com/repos/amphp/byte-stream/zipball/acbd8002b3536485c997c4e019206b3f10ca15bd",
+                "reference": "acbd8002b3536485c997c4e019206b3f10ca15bd",
+                "shasum": ""
+            },
+            "require": {
+                "amphp/amp": "^2",
+                "php": ">=7.1"
+            },
+            "require-dev": {
+                "amphp/php-cs-fixer-config": "dev-master",
+                "amphp/phpunit-util": "^1.4",
+                "friendsofphp/php-cs-fixer": "^2.3",
+                "jetbrains/phpstorm-stubs": "^2019.3",
+                "phpunit/phpunit": "^6 || ^7 || ^8",
+                "psalm/phar": "^3.11.4"
+            },
+            "type": "library",
+            "extra": {
+                "branch-alias": {
+                    "dev-master": "1.x-dev"
+                }
+            },
+            "autoload": {
+                "files": [
+                    "lib/functions.php"
+                ],
+                "psr-4": {
+                    "Amp\\ByteStream\\": "lib"
+                }
+            },
+            "notification-url": "https://packagist.org/downloads/",
+            "license": [
+                "MIT"
+            ],
+            "authors": [
+                {
+                    "name": "Aaron Piotrowski",
+                    "email": "aaron@trowski.com"
+                },
+                {
+                    "name": "Niklas Keller",
+                    "email": "me@kelunik.com"
+                }
+            ],
+            "description": "A stream abstraction to make working with non-blocking I/O simple.",
+            "homepage": "http://amphp.org/byte-stream",
+            "keywords": [
+                "amp",
+                "amphp",
+                "async",
+                "io",
+                "non-blocking",
+                "stream"
+            ],
+            "support": {
+                "irc": "irc://irc.freenode.org/amphp",
+                "issues": "https://github.com/amphp/byte-stream/issues",
+                "source": "https://github.com/amphp/byte-stream/tree/v1.8.1"
+            },
+            "funding": [
+                {
+                    "url": "https://github.com/amphp",
+                    "type": "github"
+                }
+            ],
+            "time": "2021-03-30T17:13:30+00:00"
+        },
+        {
+            "name": "colinodell/json5",
+            "version": "v2.3.0",
+            "source": {
+                "type": "git",
+                "url": "https://github.com/colinodell/json5.git",
+                "reference": "15b063f8cb5e6deb15f0cd39123264ec0d19c710"
+            },
+            "dist": {
+                "type": "zip",
+                "url": "https://api.github.com/repos/colinodell/json5/zipball/15b063f8cb5e6deb15f0cd39123264ec0d19c710",
+                "reference": "15b063f8cb5e6deb15f0cd39123264ec0d19c710",
+                "shasum": ""
+            },
+            "require": {
+                "ext-json": "*",
+                "ext-mbstring": "*",
+                "php": "^7.1.3|^8.0"
+            },
+            "conflict": {
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+                },
+                {
+                    "name": "Symfony Community",
+                    "homepage": "https://symfony.com/contributors"
+                }
+            ],
+            "description": "Generic abstractions related to writing services",
+            "homepage": "https://symfony.com",
+            "keywords": [
+                "abstractions",
+                "contracts",
+                "decoupling",
+                "interfaces",
+                "interoperability",
+                "standards"
+            ],
+            "support": {
+                "source": "https://github.com/symfony/service-contracts/tree/v3.4.0"
+            },
+            "funding": [
+                {
+                    "url": "https://symfony.com/sponsor",
+                    "type": "custom"
+                },
+                {
+                    "url": "https://github.com/fabpot",
+                    "type": "github"
+                },
+                {
+                    "url": "https://tidelift.com/funding/github/packagist/symfony/symfony",
+                    "type": "tidelift"
+                }
+            ],
+            "time": "2023-07-30T20:28:31+00:00"
+        },
+        {
+            "name": "symfony/string",
+            "version": "v6.4.0",
+            "source": {
+                "type": "git",
+                "url": "https://github.com/symfony/string.git",
+                "reference": "b45fcf399ea9c3af543a92edf7172ba21174d809"
+            },
+            "dist": {
+                "type": "zip",
+                "url": "https://api.github.com/repos/symfony/string/zipball/b45fcf399ea9c3af543a92edf7172ba21174d809",
+                "reference": "b45fcf399ea9c3af543a92edf7172ba21174d809",
+                "shasum": ""
+            },
+            "require": {
+                "php": ">=8.1",
+                "symfony/polyfill-ctype": "~1.8",
+                "symfony/polyfill-intl-grapheme": "~1.0",
+                "symfony/polyfill-intl-normalizer": "~1.0",
+                "symfony/polyfill-mbstring": "~1.0"
+            },
+            "conflict": {
+                "symfony/translation-contracts": "<2.5"
+            },
+            "require-dev": {
+                "symfony/error-handler": "^5.4|^6.0|^7.0",
+                "symfony/http-client": "^5.4|^6.0|^7.0",
+                "symfony/intl": "^6.2|^7.0",
+                "symfony/translation-contracts": "^2.5|^3.0",
+                "symfony/var-exporter": "^5.4|^6.0|^7.0"
+            },
+            "type": "library",
+            "autoload": {
+                "files": [
+                    "Resources/functions.php"
+                ],
+                "psr-4": {
+                    "Symfony\\Component\\String\\": ""
+                },
+                "exclude-from-classmap": [
+                    "/Tests/"
+                ]
+            },
+            "notification-url": "https://packagist.org/downloads/",
+            "license": [
+                "MIT"
+            ],
+            "authors": [
+                {
+                    "name": "Nicolas Grekas",
+                    "email": "p@tchwork.com"
+                },
+                {
+                    "name": "Symfony Community",
+                    "homepage": "https://symfony.com/contributors"
+                }
+            ],
+            "description": "Provides an object-oriented API to strings and deals with bytes, UTF-8 code points and grapheme clusters in a unified way",
+            "homepage": "https://symfony.com",
+            "keywords": [
+                "grapheme",
+                "i18n",
+                "string",
+                "unicode",
+                "utf-8",
+                "utf8"
+            ],
+            "support": {
+                "source": "https://github.com/symfony/string/tree/v6.4.0"
+            },
+            "funding": [
+                {
+                    "url": "https://symfony.com/sponsor",
+                    "type": "custom"
+                },
+                {
+                    "url": "https://github.com/fabpot",
+                    "type": "github"
+                },
+                {
+                    "url": "https://tidelift.com/funding/github/packagist/symfony/symfony",
+                    "type": "tidelift"
+                }
+            ],
+            "time": "2023-11-28T20:41:49+00:00"
+        },
+        {
+            "name": "thecodingmachine/safe",
+            "version": "v2.5.0",
+            "source": {
+                "type": "git",
+                "url": "https://github.com/thecodingmachine/safe.git",
+                "reference": "3115ecd6b4391662b4931daac4eba6b07a2ac1f0"
+            },
+            "dist": {
+                "type": "zip",
+                "url": "https://api.github.com/repos/thecodingmachine/safe/zipball/3115ecd6b4391662b4931daac4eba6b07a2ac1f0",
+                "reference": "3115ecd6b4391662b4931daac4eba6b07a2ac1f0",
+                "shasum": ""
+            },
+            "require": {
+                "php": "^8.0"
+            },
+            "require-dev": {
+                "phpstan/phpstan": "^1.5",
+                "phpunit/phpunit": "^9.5",
+                "squizlabs/php_codesniffer": "^3.2",
+                "thecodingmachine/phpstan-strict-rules": "^1.0"
+            },
+            "type": "library",
+            "extra": {
+                "branch-alias": {
+                    "dev-master": "2.2.x-dev"
+                }
+            },
+            "autoload": {
+                "files": [
+                    "deprecated/apc.php",
+                    "deprecated/array.php",
+                    "deprecated/datetime.php",
+                    "deprecated/libevent.php",
+                    "deprecated/misc.php",
+                    "deprecated/password.php",
+                    "deprecated/mssql.php",
+                    "deprecated/stats.php",
+                    "deprecated/strings.php",
+                    "lib/special_cases.php",
+                    "deprecated/mysqli.php",
+                    "generated/apache.php",
+                    "generated/apcu.php",
+                    "generated/array.php",
+                    "generated/bzip2.php",
+                    "generated/calendar.php",
+                    "generated/classobj.php",
+                    "generated/com.php",
+                    "generated/cubrid.php",
+                    "generated/curl.php",
+                    "generated/datetime.php",
+                    "generated/dir.php",
+                    "generated/eio.php",
+                    "generated/errorfunc.php",
+                    "generated/exec.php",
+                    "generated/fileinfo.php",
+                    "generated/filesystem.php",
+                    "generated/filter.php",
+                    "generated/fpm.php",
+                    "generated/ftp.php",
+                    "generated/funchand.php",
+                    "generated/gettext.php",
+                    "generated/gmp.php",
+                    "generated/gnupg.php",
+                    "generated/hash.php",
+                    "generated/ibase.php",
+                    "generated/ibmDb2.php",
+                    "generated/iconv.php",
+                    "generated/image.php",
+                    "generated/imap.php",
+                    "generated/info.php",
+                    "generated/inotify.php",
+                    "generated/json.php",
+                    "generated/ldap.php",
+                    "generated/libxml.php",
+                    "generated/lzf.php",
+                    "generated/mailparse.php",
+                    "generated/mbstring.php",
+                    "generated/misc.php",
+                    "generated/mysql.php",
+                    "generated/network.php",
+                    "generated/oci8.php",
+                    "generated/opcache.php",
+                    "generated/openssl.php",
+                    "generated/outcontrol.php",
+                    "generated/pcntl.php",
+                    "generated/pcre.php",
+                    "generated/pgsql.php",
+                    "generated/posix.php",
+                    "generated/ps.php",
+                    "generated/pspell.php",
+                    "generated/readline.php",
+                    "generated/rpminfo.php",
+                    "generated/rrd.php",
+                    "generated/sem.php",
+                    "generated/session.php",
+                    "generated/shmop.php",
+                    "generated/sockets.php",
+                    "generated/sodium.php",
+                    "generated/solr.php",
+                    "generated/spl.php",
+                    "generated/sqlsrv.php",
+                    "generated/ssdeep.php",
+                    "generated/ssh2.php",
+                    "generated/stream.php",
+                    "generated/strings.php",
+                    "generated/swoole.php",
+                    "generated/uodbc.php",
+                    "generated/uopz.php",
+                    "generated/url.php",
+                    "generated/var.php",
+                    "generated/xdiff.php",
+                    "generated/xml.php",
+                    "generated/xmlrpc.php",
+                    "generated/yaml.php",
+                    "generated/yaz.php",
+                    "generated/zip.php",
+                    "generated/zlib.php"
+                ],
+                "classmap": [
+                    "lib/DateTime.php",
+                    "lib/DateTimeImmutable.php",
+                    "lib/Exceptions/",
+                    "deprecated/Exceptions/",
+                    "generated/Exceptions/"
+                ]
+            },
+            "notification-url": "https://packagist.org/downloads/",
+            "license": [
+                "MIT"
+            ],
+            "description": "PHP core functions that throw exceptions instead of returning FALSE on error",
+            "support": {
+                "issues": "https://github.com/thecodingmachine/safe/issues",
+                "source": "https://github.com/thecodingmachine/safe/tree/v2.5.0"
+            },
+            "time": "2023-04-05T11:54:14+00:00"
+        },
+        {
+            "name": "theseer/tokenizer",
+            "version": "1.2.2",
+            "source": {
+                "type": "git",
+                "url": "https://github.com/theseer/tokenizer.git",
+                "reference": "b2ad5003ca10d4ee50a12da31de12a5774ba6b96"
+            },
+            "dist": {
+                "type": "zip",
+                "url": "https://api.github.com/repos/theseer/tokenizer/zipball/b2ad5003ca10d4ee50a12da31de12a5774ba6b96",
+                "reference": "b2ad5003ca10d4ee50a12da31de12a5774ba6b96",
+                "shasum": ""
+            },
+            "require": {
+                "ext-dom": "*",
+                "ext-tokenizer": "*",
+                "ext-xmlwriter": "*",
+                "php": "^7.2 || ^8.0"
+            },
+            "type": "library",
+            "autoload": {
+                "classmap": [
+                    "src/"
+                ]
+            },
+            "notification-url": "https://packagist.org/downloads/",
+            "license": [
+                "BSD-3-Clause"
+            ],
+            "authors": [
+                {
+                    "name": "Arne Blankerts",
+                    "email": "arne@blankerts.de",
+                    "role": "Developer"
+                }
+            ],
+            "description": "A small library for converting tokenized PHP source code into XML and potentially other formats",
+            "support": {
+                "issues": "https://github.com/theseer/tokenizer/issues",
+                "source": "https://github.com/theseer/tokenizer/tree/1.2.2"
+            },
+            "funding": [
+                {
+                    "url": "https://github.com/theseer",
+                    "type": "github"
+                }
+            ],
+            "time": "2023-11-20T00:12:19+00:00"
+        },
+        {
+            "name": "vimeo/psalm",
+            "version": "5.16.0",
+            "source": {
+                "type": "git",
+                "url": "https://github.com/vimeo/psalm.git",
+                "reference": "2897ba636551a8cb61601cc26f6ccfbba6c36591"
+            },
+            "dist": {
+                "type": "zip",
+                "url": "https://api.github.com/repos/vimeo/psalm/zipball/2897ba636551a8cb61601cc26f6ccfbba6c36591",
+                "reference": "2897ba636551a8cb61601cc26f6ccfbba6c36591",
+                "shasum": ""
+            },
+            "require": {
+                "amphp/amp": "^2.4.2",
+                "amphp/byte-stream": "^1.5",
+                "composer-runtime-api": "^2",
+                "composer/semver": "^1.4 || ^2.0 || ^3.0",
+                "composer/xdebug-handler": "^2.0 || ^3.0",
+                "dnoegel/php-xdg-base-dir": "^0.1.1",
+                "ext-ctype": "*",
+                "ext-dom": "*",
+                "ext-json": "*",
+                "ext-libxml": "*",
+                "ext-mbstring": "*",
+                "ext-simplexml": "*",
+                "ext-tokenizer": "*",
+                "felixfbecker/advanced-json-rpc": "^3.1",
+                "felixfbecker/language-server-protocol": "^1.5.2",
+                "fidry/cpu-core-counter": "^0.4.1 || ^0.5.1",
+                "netresearch/jsonmapper": "^1.0 || ^2.0 || ^3.0 || ^4.0",
+                "nikic/php-parser": "^4.16",
+                "php": "^7.4 || ~8.0.0 || ~8.1.0 || ~8.2.0 || ~8.3.0",
+                "sebastian/diff": "^4.0 || ^5.0",
+                "spatie/array-to-xml": "^2.17.0 || ^3.0",
+                "symfony/console": "^4.1.6 || ^5.0 || ^6.0 || ^7.0",
+                "symfony/filesystem": "^5.4 || ^6.0 || ^7.0"
+            },
+            "conflict": {
+                "nikic/php-parser": "4.17.0"
+            },
+            "provide": {
+                "psalm/psalm": "self.version"
+            },
+            "require-dev": {
+                "amphp/phpunit-util": "^2.0",
+                "bamarni/composer-bin-plugin": "^1.4",
+                "brianium/paratest": "^6.9",
+                "ext-curl": "*",
+                "mockery/mockery": "^1.5",
+                "nunomaduro/mock-final-classes": "^1.1",
+                "php-parallel-lint/php-parallel-lint": "^1.2",
+                "phpstan/phpdoc-parser": "^1.6",
+                "phpunit/phpunit": "^9.6",
+                "psalm/plugin-mockery": "^1.1",
+                "psalm/plugin-phpunit": "^0.18",
+                "slevomat/coding-standard": "^8.4",
+                "squizlabs/php_codesniffer": "^3.6",
+                "symfony/process": "^4.4 || ^5.0 || ^6.0 || ^7.0"
+            },
+            "suggest": {
+                "ext-curl": "In order to send data to shepherd",
+                "ext-igbinary": "^2.0.5 is required, used to serialize caching data"
+            },
+            "bin": [
+                "psalm",
+                "psalm-language-server",
+                "psalm-plugin",
+                "psalm-refactor",
+                "psalter"
+            ],
+            "type": "project",
+            "extra": {
+                "branch-alias": {
+                    "dev-master": "5.x-dev",
+                    "dev-4.x": "4.x-dev",
+                    "dev-3.x": "3.x-dev",
+                    "dev-2.x": "2.x-dev",
+                    "dev-1.x": "1.x-dev"
+                }
+            },
+            "autoload": {
+                "psr-4": {
+                    "Psalm\\": "src/Psalm/"
+                }
+            },
+            "notification-url": "https://packagist.org/downloads/",
+            "license": [
+                "MIT"
+            ],
+            "authors": [
+                {
+                    "name": "Matthew Brown"
+                }
+            ],
+            "description": "A static analysis tool for finding errors in PHP applications",
+            "keywords": [
+                "code",
+                "inspection",
+                "php",
+                "static analysis"
+            ],
+            "support": {
+                "docs": "https://psalm.dev/docs",
+                "issues": "https://github.com/vimeo/psalm/issues",
+                "source": "https://github.com/vimeo/psalm"
+            },
+            "time": "2023-11-22T20:38:47+00:00"
+        },
+        {
+            "name": "webmozart/assert",
+            "version": "1.11.0",
+            "source": {
+                "type": "git",
+                "url": "https://github.com/webmozarts/assert.git",
+                "reference": "11cb2199493b2f8a3b53e7f19068fc6aac760991"
+            },
+            "dist": {
+                "type": "zip",
+                "url": "https://api.github.com/repos/webmozarts/assert/zipball/11cb2199493b2f8a3b53e7f19068fc6aac760991",
+                "reference": "11cb2199493b2f8a3b53e7f19068fc6aac760991",
+                "shasum": ""
+            },
+            "require": {
+                "ext-ctype": "*",
+                "php": "^7.2 || ^8.0"
+            },
+            "conflict": {
+                "phpstan/phpstan": "<0.12.20",
+                "vimeo/psalm": "<4.6.1 || 4.6.2"
+            },
+            "require-dev": {
+                "phpunit/phpunit": "^8.5.13"
+            },
+            "type": "library",
+            "extra": {
+                "branch-alias": {
+                    "dev-master": "1.10-dev"
+                }
+            },
+            "autoload": {
+                "psr-4": {
+                    "Webmozart\\Assert\\": "src/"
+                }
+            },
+            "notification-url": "https://packagist.org/downloads/",
+            "license": [
+                "MIT"
+            ],
+            "authors": [
+                {
+                    "name": "Bernhard Schussek",
+                    "email": "bschussek@gmail.com"
+                }
+            ],
+            "description": "Assertions to validate method input/output with nice error messages.",
+            "keywords": [
+                "assert",
+                "check",
+                "validate"
+            ],
+            "support": {
+                "issues": "https://github.com/webmozarts/assert/issues",
+                "source": "https://github.com/webmozarts/assert/tree/1.11.0"
+            },
+            "time": "2022-06-03T18:03:27+00:00"
+        }
+    ],
+    "aliases": [],
+    "minimum-stability": "stable",
+    "stability-flags": [],
+    "prefer-stable": false,
+    "prefer-lowest": false,
+    "platform": [],
+    "platform-dev": [],
+    "platform-overrides": {
+        "php": "8.1.99"
+    },
+    "plugin-api-version": "2.3.0"
+}
diff --git a/test/unit/Roave/InfectionStaticAnalysisTest/ProjectWithBaselineTest.php b/test/unit/Roave/InfectionStaticAnalysisTest/ProjectWithBaselineTest.php
index a2520271..a9eae8be 100644
--- a/test/unit/Roave/InfectionStaticAnalysisTest/ProjectWithBaselineTest.php
+++ b/test/unit/Roave/InfectionStaticAnalysisTest/ProjectWithBaselineTest.php
@@ -11,7 +11,7 @@ class ProjectWithBaselineTest extends TestCase
 {
     public function setUp(): void
     {
-        $process = new Process(['composer', 'update']);
+        $process = new Process(['composer', 'install']);
         $process->setWorkingDirectory(__DIR__ . '/../../../asset/ProjectWithPsalmBaseline');
 
         $process->run();

From cd9ac5ef285e0d70d08ffe7dc50b2f8ac7447765 Mon Sep 17 00:00:00 2001
From: Barney Laurance <barney@thebiggive.org.uk>
Date: Sat, 2 Dec 2023 15:28:20 +0000
Subject: [PATCH 04/11] 484: Remove infection report in test directory commited
 by mistake

---
 .../ProjectWithPsalmBaseline/infection.html   | 19 -------------------
 1 file changed, 19 deletions(-)
 delete mode 100644 test/asset/ProjectWithPsalmBaseline/infection.html

diff --git a/test/asset/ProjectWithPsalmBaseline/infection.html b/test/asset/ProjectWithPsalmBaseline/infection.html
deleted file mode 100644
index 14362f3d..00000000
--- a/test/asset/ProjectWithPsalmBaseline/infection.html
+++ /dev/null
@@ -1,19 +0,0 @@
-<!DOCTYPE html>
-<html>
-    <body>
-        <a href="/">Back</a>
-        <mutation-test-report-app title-postfix="Infection"></mutation-test-report-app>
-        <script defer src="https://cdn.jsdelivr.net/npm/mutation-testing-elements/dist/mutation-test-elements.js"></script>
-        <script>
-            const app = document.getElementsByTagName('mutation-test-report-app').item(0);
-            function updateTheme() {
-                document.body.style.backgroundColor = app.themeBackgroundColor;
-            }
-            app.addEventListener('theme-changed', updateTheme);
-            updateTheme();
-
-            document.getElementsByTagName('mutation-test-report-app').item(0).report = {"schemaVersion":"1","thresholds":{"high":90,"low":50},"files":{"\/home\/barney\/projects\/infection-static-analysis-plugin\/test\/asset\/ProjectWithPsalmBaseline\/src\/HelloWorld.php":{"language":"php","source":"<?php\n\nnamespace Acme\\ProjectWithPsalmBaseline;\n\n\/**\n * @psalm-api\n *\/\nclass HelloWorld\n{\n    public function takesImplictMixedReturnsIntAndIsCoveredByBaseline($mixture): int\n    {\n        return $mixture + 2;\n    }\n}","mutants":[{"id":"02f41da03e0e7d96b88d606098db1fb5","mutatorName":"PublicVisibility","replacement":"protected function takesImplictMixedReturnsIntAndIsCoveredByBaseline($mixture) : int","description":"Replaces the `public` method visibility keyword with `protected`.","location":{"start":{"line":10,"column":5},"end":{"line":10,"column":85}},"status":"Killed","statusReason":"PHPUnit 10.5.1 by Sebastian Bergmann and contributors.\n\nRuntime:       PHP 8.1.12-1ubuntu4.3\nConfiguration: \/tmp\/infection\/phpunitConfiguration.02f41da03e0e7d96b88d606098db1fb5.infection.xml\n\nE                                                                   1 \/ 1 (100%)\n\nTime: 00:00.004, Memory: 12.00 MB\n\nThere was 1 error:\n\n1) HelloWorldTest::testNothingButProvideCoverage\nError: Call to protected method Acme\\ProjectWithPsalmBaseline\\HelloWorld::takesImplictMixedReturnsIntAndIsCoveredByBaseline() from scope HelloWorldTest\n\n\/home\/barney\/projects\/infection-static-analysis-plugin\/test\/asset\/ProjectWithPsalmBaseline\/tests\/HelloWorldTest.php:13\n\nERRORS!\nTests: 1, Assertions: 0, Errors: 1.","coveredBy":["97ea2e5ee1e0a71c3f2a240c57ba2162"],"killedBy":["97ea2e5ee1e0a71c3f2a240c57ba2162"],"testsCompleted":1},{"id":"362c892a8ec7d8782c4427adbed5607c","mutatorName":"DecrementInteger","replacement":"return $mixture + 1;","description":"Decrements an integer value with 1.","location":{"start":{"line":12,"column":9},"end":{"line":12,"column":29}},"status":"Killed","statusReason":"PHPUnit 10.5.1 by Sebastian Bergmann and contributors.\n\nRuntime:       PHP 8.1.12-1ubuntu4.3\nConfiguration: \/tmp\/infection\/phpunitConfiguration.362c892a8ec7d8782c4427adbed5607c.infection.xml\n\n.                                                                   1 \/ 1 (100%)\n\nTime: 00:00.002, Memory: 10.00 MB\n\nOK (1 test, 1 assertion)","coveredBy":["97ea2e5ee1e0a71c3f2a240c57ba2162"],"killedBy":[],"testsCompleted":0},{"id":"d136f1faa27eac8c072f6e8070be3e14","mutatorName":"IncrementInteger","replacement":"return $mixture + 3;","description":"Increments an integer value with 1.","location":{"start":{"line":12,"column":9},"end":{"line":12,"column":29}},"status":"Killed","statusReason":"PHPUnit 10.5.1 by Sebastian Bergmann and contributors.\n\nRuntime:       PHP 8.1.12-1ubuntu4.3\nConfiguration: \/tmp\/infection\/phpunitConfiguration.d136f1faa27eac8c072f6e8070be3e14.infection.xml\n\n.                                                                   1 \/ 1 (100%)\n\nTime: 00:00.002, Memory: 10.00 MB\n\nOK (1 test, 1 assertion)","coveredBy":["97ea2e5ee1e0a71c3f2a240c57ba2162"],"killedBy":[],"testsCompleted":0},{"id":"ddf10fadb3cfffee67afdf0813d4a1a7","mutatorName":"Plus","replacement":"return $mixture - 2;","description":"Replaces an addition operator (`+`) with a subtraction operator (`-`).","location":{"start":{"line":12,"column":9},"end":{"line":12,"column":29}},"status":"Killed","statusReason":"PHPUnit 10.5.1 by Sebastian Bergmann and contributors.\n\nRuntime:       PHP 8.1.12-1ubuntu4.3\nConfiguration: \/tmp\/infection\/phpunitConfiguration.ddf10fadb3cfffee67afdf0813d4a1a7.infection.xml\n\n.                                                                   1 \/ 1 (100%)\n\nTime: 00:00.002, Memory: 10.00 MB\n\nOK (1 test, 1 assertion)","coveredBy":["97ea2e5ee1e0a71c3f2a240c57ba2162"],"killedBy":[],"testsCompleted":0}]}},"testFiles":{"\/home\/barney\/projects\/infection-static-analysis-plugin\/test\/asset\/ProjectWithPsalmBaseline\/tests\/HelloWorldTest.php":{"tests":[{"id":"97ea2e5ee1e0a71c3f2a240c57ba2162","name":"HelloWorldTest::testNothingButProvideCoverage"}]}},"framework":{"name":"Infection","branding":{"homepageUrl":"https:\/\/infection.github.io\/","imageUrl":"https:\/\/infection.github.io\/images\/logo.png"}}}
-            ;
-        </script>
-    </body>
-</html>
\ No newline at end of file

From ea6ce9c717ea4c66f8caa8bdc4b69c04725b5910 Mon Sep 17 00:00:00 2001
From: Barney Laurance <barney@thebiggive.org.uk>
Date: Sat, 2 Dec 2023 15:32:43 +0000
Subject: [PATCH 05/11] 484: Restore blank line at end of gitignore

---
 .gitignore | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.gitignore b/.gitignore
index c9789f99..cfe2b239 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,3 +1,3 @@
 .phpcs-cache
 .phpunit.result.cache
-vendor
\ No newline at end of file
+vendor

From 27b8faa04ffd3551446406e672096235bcf9c813 Mon Sep 17 00:00:00 2001
From: Marco Pivetta <ocramius@gmail.com>
Date: Thu, 8 Feb 2024 17:21:01 +0100
Subject: [PATCH 06/11] Removing trailing spaces

---
 README.md | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index dcce2a1c..e83e0021 100644
--- a/README.md
+++ b/README.md
@@ -25,9 +25,9 @@ composer require --dev roave/infection-static-analysis-plugin
 vendor/bin/roave-infection-static-analysis-plugin
 ```
 
-Do not use this tool if your project has a 
+Do not use this tool if your project has a
 [Psalm baseline](https://psalm.dev/docs/running_psalm/dealing_with_code_issues/#using-a-baseline-file) file. In that
-case issues that are ignored due to being present in the baseline will be reported as killed, spuriously inflating your 
+case issues that are ignored due to being present in the baseline will be reported as killed, spuriously inflating your
 mutation score indicator. See [issue #484](https://github.com/Roave/infection-static-analysis-plugin/issues/484).
 
 ### Configuration

From 04bf24d0b405c2515ab6378ebbcf93884387a34f Mon Sep 17 00:00:00 2001
From: Marco Pivetta <ocramius@gmail.com>
Date: Thu, 8 Feb 2024 17:24:59 +0100
Subject: [PATCH 07/11] Ignore psalm issues in test assets

---
 psalm.xml | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/psalm.xml b/psalm.xml
index f760fd49..8e8bc202 100644
--- a/psalm.xml
+++ b/psalm.xml
@@ -9,9 +9,12 @@
     <projectFiles>
         <directory name="bin"/>
         <directory name="src"/>
-        <directory name="test"/>
+        <directory name="test/unit"/>
+        <ignoreFiles>
+            <directory name="test/asset/ProjectWithPsalmBaseline/src"/>
+        </ignoreFiles>
     </projectFiles>
-
+    
     <issueHandlers>
         <!--
         we do a loooooooot of kinky stuff with infection's internals: that's by "design",

From 87842c8776fe969fcacee05b3c5b24bb0b003991 Mon Sep 17 00:00:00 2001
From: Marco Pivetta <ocramius@gmail.com>
Date: Thu, 8 Feb 2024 17:26:47 +0100
Subject: [PATCH 08/11] Ignore CS issues in test assets

---
 phpcs.xml.dist | 1 +
 1 file changed, 1 insertion(+)

diff --git a/phpcs.xml.dist b/phpcs.xml.dist
index 7d7578d3..b4d9cd56 100644
--- a/phpcs.xml.dist
+++ b/phpcs.xml.dist
@@ -13,6 +13,7 @@
 
     <file>src</file>
     <file>test</file>
+    <exclude-pattern>test/asset/ProjectWithPsalmBaseline</exclude-pattern>
 
     <rule ref="Doctrine">
         <!-- properties in psalm config do not use camel-case naming -->

From 6ee1169a36667dd20b70d2a39ad8a57588d05339 Mon Sep 17 00:00:00 2001
From: Marco Pivetta <ocramius@gmail.com>
Date: Thu, 8 Feb 2024 17:52:37 +0100
Subject: [PATCH 09/11] `composer install` **MUST** run when running
 installation in a test asset directory

---
 .../InfectionStaticAnalysisTest/ProjectWithBaselineTest.php     | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/test/unit/Roave/InfectionStaticAnalysisTest/ProjectWithBaselineTest.php b/test/unit/Roave/InfectionStaticAnalysisTest/ProjectWithBaselineTest.php
index a9eae8be..a7464b69 100644
--- a/test/unit/Roave/InfectionStaticAnalysisTest/ProjectWithBaselineTest.php
+++ b/test/unit/Roave/InfectionStaticAnalysisTest/ProjectWithBaselineTest.php
@@ -14,7 +14,7 @@ public function setUp(): void
         $process = new Process(['composer', 'install']);
         $process->setWorkingDirectory(__DIR__ . '/../../../asset/ProjectWithPsalmBaseline');
 
-        $process->run();
+        $process->mustRun();
     }
 
     public function testItSpuriouslyReportsMutantAsKilledWithPsalmBaseline(): void

From 71f3c16d34b73f09c8c9e445db45767928b7ddb9 Mon Sep 17 00:00:00 2001
From: Marco Pivetta <ocramius@gmail.com>
Date: Thu, 8 Feb 2024 19:29:24 +0100
Subject: [PATCH 10/11] Removing the need for a separate `composer install`
 running as part of the test suite

---
 composer.json                                 |    5 +-
 phpunit.xml.dist                              |    2 +-
 .../asset/ProjectWithPsalmBaseline/.gitignore |    1 -
 .../ProjectWithPsalmBaseline/composer.json    |   25 -
 .../ProjectWithPsalmBaseline/composer.lock    | 4579 -----------------
 test/asset/ProjectWithPsalmBaseline/phpunit   |   11 +
 .../ProjectWithPsalmBaseline/phpunit.xml      |    5 +-
 test/asset/ProjectWithPsalmBaseline/psalm.xml |    5 +-
 .../ProjectWithBaselineTest.php               |   12 +-
 9 files changed, 21 insertions(+), 4624 deletions(-)
 delete mode 100644 test/asset/ProjectWithPsalmBaseline/.gitignore
 delete mode 100644 test/asset/ProjectWithPsalmBaseline/composer.json
 delete mode 100644 test/asset/ProjectWithPsalmBaseline/composer.lock
 create mode 100755 test/asset/ProjectWithPsalmBaseline/phpunit

diff --git a/composer.json b/composer.json
index ca99fbf0..6bf2b823 100644
--- a/composer.json
+++ b/composer.json
@@ -31,7 +31,10 @@
     "autoload-dev": {
         "psr-4": {
             "Roave\\InfectionStaticAnalysisTest\\": "test/unit/Roave/InfectionStaticAnalysisTest"
-        }
+        },
+        "classmap": [
+            "test/asset/ProjectWithPsalmBaseline/src/HelloWorld.php"
+        ]
     },
     "config": {
         "allow-plugins": {
diff --git a/phpunit.xml.dist b/phpunit.xml.dist
index e59d8ed4..4d310920 100644
--- a/phpunit.xml.dist
+++ b/phpunit.xml.dist
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <phpunit
     xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-    xsi:noNamespaceSchemaLocation="https://schema.phpunit.de/10.1/phpunit.xsd"
+    xsi:noNamespaceSchemaLocation="vendor/phpunit/phpunit/phpunit.xsd"
     bootstrap="./vendor/autoload.php"
     beStrictAboutChangesToGlobalState="true"
     beStrictAboutCoverageMetadata="true"
diff --git a/test/asset/ProjectWithPsalmBaseline/.gitignore b/test/asset/ProjectWithPsalmBaseline/.gitignore
deleted file mode 100644
index 723504e3..00000000
--- a/test/asset/ProjectWithPsalmBaseline/.gitignore
+++ /dev/null
@@ -1 +0,0 @@
-.phpunit.cache
diff --git a/test/asset/ProjectWithPsalmBaseline/composer.json b/test/asset/ProjectWithPsalmBaseline/composer.json
deleted file mode 100644
index 35935c11..00000000
--- a/test/asset/ProjectWithPsalmBaseline/composer.json
+++ /dev/null
@@ -1,25 +0,0 @@
-{
-    "name": "acme/project-with-psalm-baseline",
-    "description": "Example hellow world app that uses a Psalm baseline",
-    "type": "project",
-    "autoload": {
-        "psr-4": {
-            "Acme\\ProjectWithPsalmBaseline\\": "src/"
-        }
-
-    },
-    "_comment": "Depending on the published version of ISAP is not great here, we should be testing against the version that exists locally. I had trouble getting that to work.",
-    "require-dev": {
-        "vimeo/psalm": "^5.16",
-        "phpunit/phpunit": "^10.5.1",
-        "roave/infection-static-analysis-plugin": "*"
-    },
-    "config": {
-        "platform": {
-            "php": "8.1.99"
-        },
-        "allow-plugins": {
-            "infection/extension-installer": true
-        }
-    }
-}
diff --git a/test/asset/ProjectWithPsalmBaseline/composer.lock b/test/asset/ProjectWithPsalmBaseline/composer.lock
deleted file mode 100644
index da1fef45..00000000
--- a/test/asset/ProjectWithPsalmBaseline/composer.lock
+++ /dev/null
@@ -1,4579 +0,0 @@
-{
-    "_readme": [
-        "This file locks the dependencies of your project to a known state",
-        "Read more about it at https://getcomposer.org/doc/01-basic-usage.md#installing-dependencies",
-        "This file is @generated automatically"
-    ],
-    "content-hash": "05af455f949ae14d11ac67a758e251c2",
-    "packages": [],
-    "packages-dev": [
-        {
-            "name": "amphp/amp",
-            "version": "v2.6.2",
-            "source": {
-                "type": "git",
-                "url": "https://github.com/amphp/amp.git",
-                "reference": "9d5100cebffa729aaffecd3ad25dc5aeea4f13bb"
-            },
-            "dist": {
-                "type": "zip",
-                "url": "https://api.github.com/repos/amphp/amp/zipball/9d5100cebffa729aaffecd3ad25dc5aeea4f13bb",
-                "reference": "9d5100cebffa729aaffecd3ad25dc5aeea4f13bb",
-                "shasum": ""
-            },
-            "require": {
-                "php": ">=7.1"
-            },
-            "require-dev": {
-                "amphp/php-cs-fixer-config": "dev-master",
-                "amphp/phpunit-util": "^1",
-                "ext-json": "*",
-                "jetbrains/phpstorm-stubs": "^2019.3",
-                "phpunit/phpunit": "^7 | ^8 | ^9",
-                "psalm/phar": "^3.11@dev",
-                "react/promise": "^2"
-            },
-            "type": "library",
-            "extra": {
-                "branch-alias": {
-                    "dev-master": "2.x-dev"
-                }
-            },
-            "autoload": {
-                "files": [
-                    "lib/functions.php",
-                    "lib/Internal/functions.php"
-                ],
-                "psr-4": {
-                    "Amp\\": "lib"
-                }
-            },
-            "notification-url": "https://packagist.org/downloads/",
-            "license": [
-                "MIT"
-            ],
-            "authors": [
-                {
-                    "name": "Daniel Lowrey",
-                    "email": "rdlowrey@php.net"
-                },
-                {
-                    "name": "Aaron Piotrowski",
-                    "email": "aaron@trowski.com"
-                },
-                {
-                    "name": "Bob Weinand",
-                    "email": "bobwei9@hotmail.com"
-                },
-                {
-                    "name": "Niklas Keller",
-                    "email": "me@kelunik.com"
-                }
-            ],
-            "description": "A non-blocking concurrency framework for PHP applications.",
-            "homepage": "https://amphp.org/amp",
-            "keywords": [
-                "async",
-                "asynchronous",
-                "awaitable",
-                "concurrency",
-                "event",
-                "event-loop",
-                "future",
-                "non-blocking",
-                "promise"
-            ],
-            "support": {
-                "irc": "irc://irc.freenode.org/amphp",
-                "issues": "https://github.com/amphp/amp/issues",
-                "source": "https://github.com/amphp/amp/tree/v2.6.2"
-            },
-            "funding": [
-                {
-                    "url": "https://github.com/amphp",
-                    "type": "github"
-                }
-            ],
-            "time": "2022-02-20T17:52:18+00:00"
-        },
-        {
-            "name": "amphp/byte-stream",
-            "version": "v1.8.1",
-            "source": {
-                "type": "git",
-                "url": "https://github.com/amphp/byte-stream.git",
-                "reference": "acbd8002b3536485c997c4e019206b3f10ca15bd"
-            },
-            "dist": {
-                "type": "zip",
-                "url": "https://api.github.com/repos/amphp/byte-stream/zipball/acbd8002b3536485c997c4e019206b3f10ca15bd",
-                "reference": "acbd8002b3536485c997c4e019206b3f10ca15bd",
-                "shasum": ""
-            },
-            "require": {
-                "amphp/amp": "^2",
-                "php": ">=7.1"
-            },
-            "require-dev": {
-                "amphp/php-cs-fixer-config": "dev-master",
-                "amphp/phpunit-util": "^1.4",
-                "friendsofphp/php-cs-fixer": "^2.3",
-                "jetbrains/phpstorm-stubs": "^2019.3",
-                "phpunit/phpunit": "^6 || ^7 || ^8",
-                "psalm/phar": "^3.11.4"
-            },
-            "type": "library",
-            "extra": {
-                "branch-alias": {
-                    "dev-master": "1.x-dev"
-                }
-            },
-            "autoload": {
-                "files": [
-                    "lib/functions.php"
-                ],
-                "psr-4": {
-                    "Amp\\ByteStream\\": "lib"
-                }
-            },
-            "notification-url": "https://packagist.org/downloads/",
-            "license": [
-                "MIT"
-            ],
-            "authors": [
-                {
-                    "name": "Aaron Piotrowski",
-                    "email": "aaron@trowski.com"
-                },
-                {
-                    "name": "Niklas Keller",
-                    "email": "me@kelunik.com"
-                }
-            ],
-            "description": "A stream abstraction to make working with non-blocking I/O simple.",
-            "homepage": "http://amphp.org/byte-stream",
-            "keywords": [
-                "amp",
-                "amphp",
-                "async",
-                "io",
-                "non-blocking",
-                "stream"
-            ],
-            "support": {
-                "irc": "irc://irc.freenode.org/amphp",
-                "issues": "https://github.com/amphp/byte-stream/issues",
-                "source": "https://github.com/amphp/byte-stream/tree/v1.8.1"
-            },
-            "funding": [
-                {
-                    "url": "https://github.com/amphp",
-                    "type": "github"
-                }
-            ],
-            "time": "2021-03-30T17:13:30+00:00"
-        },
-        {
-            "name": "colinodell/json5",
-            "version": "v2.3.0",
-            "source": {
-                "type": "git",
-                "url": "https://github.com/colinodell/json5.git",
-                "reference": "15b063f8cb5e6deb15f0cd39123264ec0d19c710"
-            },
-            "dist": {
-                "type": "zip",
-                "url": "https://api.github.com/repos/colinodell/json5/zipball/15b063f8cb5e6deb15f0cd39123264ec0d19c710",
-                "reference": "15b063f8cb5e6deb15f0cd39123264ec0d19c710",
-                "shasum": ""
-            },
-            "require": {
-                "ext-json": "*",
-                "ext-mbstring": "*",
-                "php": "^7.1.3|^8.0"
-            },
-            "conflict": {
-                "scrutinizer/ocular": "1.7.*"
-            },
-            "require-dev": {
-                "mikehaertl/php-shellcommand": "^1.2.5",
-                "phpstan/phpstan": "^1.4",
-                "scrutinizer/ocular": "^1.6",
-                "squizlabs/php_codesniffer": "^2.3 || ^3.0",
-                "symfony/finder": "^4.4|^5.4|^6.0",
-                "symfony/phpunit-bridge": "^5.4|^6.0"
-            },
-            "bin": [
-                "bin/json5"
-            ],
-            "type": "library",
-            "extra": {
-                "branch-alias": {
-                    "dev-main": "3.0-dev"
-                }
-            },
-            "autoload": {
-                "files": [
-                    "src/global.php"
-                ],
-                "psr-4": {
-                    "ColinODell\\Json5\\": "src"
-                }
-            },
-            "notification-url": "https://packagist.org/downloads/",
-            "license": [
-                "MIT"
-            ],
-            "authors": [
-                {
-                    "name": "Colin O'Dell",
-                    "email": "colinodell@gmail.com",
-                    "homepage": "https://www.colinodell.com",
-                    "role": "Developer"
-                }
-            ],
-            "description": "UTF-8 compatible JSON5 parser for PHP",
-            "homepage": "https://github.com/colinodell/json5",
-            "keywords": [
-                "JSON5",
-                "json",
-                "json5_decode",
-                "json_decode"
-            ],
-            "support": {
-                "issues": "https://github.com/colinodell/json5/issues",
-                "source": "https://github.com/colinodell/json5/tree/v2.3.0"
-            },
-            "funding": [
-                {
-                    "url": "https://www.colinodell.com/sponsor",
-                    "type": "custom"
-                },
-                {
-                    "url": "https://www.paypal.me/colinpodell/10.00",
-                    "type": "custom"
-                },
-                {
-                    "url": "https://github.com/colinodell",
-                    "type": "github"
-                },
-                {
-                    "url": "https://www.patreon.com/colinodell",
-                    "type": "patreon"
-                }
-            ],
-            "time": "2022-12-27T16:44:40+00:00"
-        },
-        {
-            "name": "composer/pcre",
-            "version": "3.1.1",
-            "source": {
-                "type": "git",
-                "url": "https://github.com/composer/pcre.git",
-                "reference": "00104306927c7a0919b4ced2aaa6782c1e61a3c9"
-            },
-            "dist": {
-                "type": "zip",
-                "url": "https://api.github.com/repos/composer/pcre/zipball/00104306927c7a0919b4ced2aaa6782c1e61a3c9",
-                "reference": "00104306927c7a0919b4ced2aaa6782c1e61a3c9",
-                "shasum": ""
-            },
-            "require": {
-                "php": "^7.4 || ^8.0"
-            },
-            "require-dev": {
-                "phpstan/phpstan": "^1.3",
-                "phpstan/phpstan-strict-rules": "^1.1",
-                "symfony/phpunit-bridge": "^5"
-            },
-            "type": "library",
-            "extra": {
-                "branch-alias": {
-                    "dev-main": "3.x-dev"
-                }
-            },
-            "autoload": {
-                "psr-4": {
-                    "Composer\\Pcre\\": "src"
-                }
-            },
-            "notification-url": "https://packagist.org/downloads/",
-            "license": [
-                "MIT"
-            ],
-            "authors": [
-                {
-                    "name": "Jordi Boggiano",
-                    "email": "j.boggiano@seld.be",
-                    "homepage": "http://seld.be"
-                }
-            ],
-            "description": "PCRE wrapping library that offers type-safe preg_* replacements.",
-            "keywords": [
-                "PCRE",
-                "preg",
-                "regex",
-                "regular expression"
-            ],
-            "support": {
-                "issues": "https://github.com/composer/pcre/issues",
-                "source": "https://github.com/composer/pcre/tree/3.1.1"
-            },
-            "funding": [
-                {
-                    "url": "https://packagist.com",
-                    "type": "custom"
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-                "type": "git",
-                "url": "https://github.com/thecodingmachine/safe.git",
-                "reference": "3115ecd6b4391662b4931daac4eba6b07a2ac1f0"
-            },
-            "dist": {
-                "type": "zip",
-                "url": "https://api.github.com/repos/thecodingmachine/safe/zipball/3115ecd6b4391662b4931daac4eba6b07a2ac1f0",
-                "reference": "3115ecd6b4391662b4931daac4eba6b07a2ac1f0",
-                "shasum": ""
-            },
-            "require": {
-                "php": "^8.0"
-            },
-            "require-dev": {
-                "phpstan/phpstan": "^1.5",
-                "phpunit/phpunit": "^9.5",
-                "squizlabs/php_codesniffer": "^3.2",
-                "thecodingmachine/phpstan-strict-rules": "^1.0"
-            },
-            "type": "library",
-            "extra": {
-                "branch-alias": {
-                    "dev-master": "2.2.x-dev"
-                }
-            },
-            "autoload": {
-                "files": [
-                    "deprecated/apc.php",
-                    "deprecated/array.php",
-                    "deprecated/datetime.php",
-                    "deprecated/libevent.php",
-                    "deprecated/misc.php",
-                    "deprecated/password.php",
-                    "deprecated/mssql.php",
-                    "deprecated/stats.php",
-                    "deprecated/strings.php",
-                    "lib/special_cases.php",
-                    "deprecated/mysqli.php",
-                    "generated/apache.php",
-                    "generated/apcu.php",
-                    "generated/array.php",
-                    "generated/bzip2.php",
-                    "generated/calendar.php",
-                    "generated/classobj.php",
-                    "generated/com.php",
-                    "generated/cubrid.php",
-                    "generated/curl.php",
-                    "generated/datetime.php",
-                    "generated/dir.php",
-                    "generated/eio.php",
-                    "generated/errorfunc.php",
-                    "generated/exec.php",
-                    "generated/fileinfo.php",
-                    "generated/filesystem.php",
-                    "generated/filter.php",
-                    "generated/fpm.php",
-                    "generated/ftp.php",
-                    "generated/funchand.php",
-                    "generated/gettext.php",
-                    "generated/gmp.php",
-                    "generated/gnupg.php",
-                    "generated/hash.php",
-                    "generated/ibase.php",
-                    "generated/ibmDb2.php",
-                    "generated/iconv.php",
-                    "generated/image.php",
-                    "generated/imap.php",
-                    "generated/info.php",
-                    "generated/inotify.php",
-                    "generated/json.php",
-                    "generated/ldap.php",
-                    "generated/libxml.php",
-                    "generated/lzf.php",
-                    "generated/mailparse.php",
-                    "generated/mbstring.php",
-                    "generated/misc.php",
-                    "generated/mysql.php",
-                    "generated/network.php",
-                    "generated/oci8.php",
-                    "generated/opcache.php",
-                    "generated/openssl.php",
-                    "generated/outcontrol.php",
-                    "generated/pcntl.php",
-                    "generated/pcre.php",
-                    "generated/pgsql.php",
-                    "generated/posix.php",
-                    "generated/ps.php",
-                    "generated/pspell.php",
-                    "generated/readline.php",
-                    "generated/rpminfo.php",
-                    "generated/rrd.php",
-                    "generated/sem.php",
-                    "generated/session.php",
-                    "generated/shmop.php",
-                    "generated/sockets.php",
-                    "generated/sodium.php",
-                    "generated/solr.php",
-                    "generated/spl.php",
-                    "generated/sqlsrv.php",
-                    "generated/ssdeep.php",
-                    "generated/ssh2.php",
-                    "generated/stream.php",
-                    "generated/strings.php",
-                    "generated/swoole.php",
-                    "generated/uodbc.php",
-                    "generated/uopz.php",
-                    "generated/url.php",
-                    "generated/var.php",
-                    "generated/xdiff.php",
-                    "generated/xml.php",
-                    "generated/xmlrpc.php",
-                    "generated/yaml.php",
-                    "generated/yaz.php",
-                    "generated/zip.php",
-                    "generated/zlib.php"
-                ],
-                "classmap": [
-                    "lib/DateTime.php",
-                    "lib/DateTimeImmutable.php",
-                    "lib/Exceptions/",
-                    "deprecated/Exceptions/",
-                    "generated/Exceptions/"
-                ]
-            },
-            "notification-url": "https://packagist.org/downloads/",
-            "license": [
-                "MIT"
-            ],
-            "description": "PHP core functions that throw exceptions instead of returning FALSE on error",
-            "support": {
-                "issues": "https://github.com/thecodingmachine/safe/issues",
-                "source": "https://github.com/thecodingmachine/safe/tree/v2.5.0"
-            },
-            "time": "2023-04-05T11:54:14+00:00"
-        },
-        {
-            "name": "theseer/tokenizer",
-            "version": "1.2.2",
-            "source": {
-                "type": "git",
-                "url": "https://github.com/theseer/tokenizer.git",
-                "reference": "b2ad5003ca10d4ee50a12da31de12a5774ba6b96"
-            },
-            "dist": {
-                "type": "zip",
-                "url": "https://api.github.com/repos/theseer/tokenizer/zipball/b2ad5003ca10d4ee50a12da31de12a5774ba6b96",
-                "reference": "b2ad5003ca10d4ee50a12da31de12a5774ba6b96",
-                "shasum": ""
-            },
-            "require": {
-                "ext-dom": "*",
-                "ext-tokenizer": "*",
-                "ext-xmlwriter": "*",
-                "php": "^7.2 || ^8.0"
-            },
-            "type": "library",
-            "autoload": {
-                "classmap": [
-                    "src/"
-                ]
-            },
-            "notification-url": "https://packagist.org/downloads/",
-            "license": [
-                "BSD-3-Clause"
-            ],
-            "authors": [
-                {
-                    "name": "Arne Blankerts",
-                    "email": "arne@blankerts.de",
-                    "role": "Developer"
-                }
-            ],
-            "description": "A small library for converting tokenized PHP source code into XML and potentially other formats",
-            "support": {
-                "issues": "https://github.com/theseer/tokenizer/issues",
-                "source": "https://github.com/theseer/tokenizer/tree/1.2.2"
-            },
-            "funding": [
-                {
-                    "url": "https://github.com/theseer",
-                    "type": "github"
-                }
-            ],
-            "time": "2023-11-20T00:12:19+00:00"
-        },
-        {
-            "name": "vimeo/psalm",
-            "version": "5.16.0",
-            "source": {
-                "type": "git",
-                "url": "https://github.com/vimeo/psalm.git",
-                "reference": "2897ba636551a8cb61601cc26f6ccfbba6c36591"
-            },
-            "dist": {
-                "type": "zip",
-                "url": "https://api.github.com/repos/vimeo/psalm/zipball/2897ba636551a8cb61601cc26f6ccfbba6c36591",
-                "reference": "2897ba636551a8cb61601cc26f6ccfbba6c36591",
-                "shasum": ""
-            },
-            "require": {
-                "amphp/amp": "^2.4.2",
-                "amphp/byte-stream": "^1.5",
-                "composer-runtime-api": "^2",
-                "composer/semver": "^1.4 || ^2.0 || ^3.0",
-                "composer/xdebug-handler": "^2.0 || ^3.0",
-                "dnoegel/php-xdg-base-dir": "^0.1.1",
-                "ext-ctype": "*",
-                "ext-dom": "*",
-                "ext-json": "*",
-                "ext-libxml": "*",
-                "ext-mbstring": "*",
-                "ext-simplexml": "*",
-                "ext-tokenizer": "*",
-                "felixfbecker/advanced-json-rpc": "^3.1",
-                "felixfbecker/language-server-protocol": "^1.5.2",
-                "fidry/cpu-core-counter": "^0.4.1 || ^0.5.1",
-                "netresearch/jsonmapper": "^1.0 || ^2.0 || ^3.0 || ^4.0",
-                "nikic/php-parser": "^4.16",
-                "php": "^7.4 || ~8.0.0 || ~8.1.0 || ~8.2.0 || ~8.3.0",
-                "sebastian/diff": "^4.0 || ^5.0",
-                "spatie/array-to-xml": "^2.17.0 || ^3.0",
-                "symfony/console": "^4.1.6 || ^5.0 || ^6.0 || ^7.0",
-                "symfony/filesystem": "^5.4 || ^6.0 || ^7.0"
-            },
-            "conflict": {
-                "nikic/php-parser": "4.17.0"
-            },
-            "provide": {
-                "psalm/psalm": "self.version"
-            },
-            "require-dev": {
-                "amphp/phpunit-util": "^2.0",
-                "bamarni/composer-bin-plugin": "^1.4",
-                "brianium/paratest": "^6.9",
-                "ext-curl": "*",
-                "mockery/mockery": "^1.5",
-                "nunomaduro/mock-final-classes": "^1.1",
-                "php-parallel-lint/php-parallel-lint": "^1.2",
-                "phpstan/phpdoc-parser": "^1.6",
-                "phpunit/phpunit": "^9.6",
-                "psalm/plugin-mockery": "^1.1",
-                "psalm/plugin-phpunit": "^0.18",
-                "slevomat/coding-standard": "^8.4",
-                "squizlabs/php_codesniffer": "^3.6",
-                "symfony/process": "^4.4 || ^5.0 || ^6.0 || ^7.0"
-            },
-            "suggest": {
-                "ext-curl": "In order to send data to shepherd",
-                "ext-igbinary": "^2.0.5 is required, used to serialize caching data"
-            },
-            "bin": [
-                "psalm",
-                "psalm-language-server",
-                "psalm-plugin",
-                "psalm-refactor",
-                "psalter"
-            ],
-            "type": "project",
-            "extra": {
-                "branch-alias": {
-                    "dev-master": "5.x-dev",
-                    "dev-4.x": "4.x-dev",
-                    "dev-3.x": "3.x-dev",
-                    "dev-2.x": "2.x-dev",
-                    "dev-1.x": "1.x-dev"
-                }
-            },
-            "autoload": {
-                "psr-4": {
-                    "Psalm\\": "src/Psalm/"
-                }
-            },
-            "notification-url": "https://packagist.org/downloads/",
-            "license": [
-                "MIT"
-            ],
-            "authors": [
-                {
-                    "name": "Matthew Brown"
-                }
-            ],
-            "description": "A static analysis tool for finding errors in PHP applications",
-            "keywords": [
-                "code",
-                "inspection",
-                "php",
-                "static analysis"
-            ],
-            "support": {
-                "docs": "https://psalm.dev/docs",
-                "issues": "https://github.com/vimeo/psalm/issues",
-                "source": "https://github.com/vimeo/psalm"
-            },
-            "time": "2023-11-22T20:38:47+00:00"
-        },
-        {
-            "name": "webmozart/assert",
-            "version": "1.11.0",
-            "source": {
-                "type": "git",
-                "url": "https://github.com/webmozarts/assert.git",
-                "reference": "11cb2199493b2f8a3b53e7f19068fc6aac760991"
-            },
-            "dist": {
-                "type": "zip",
-                "url": "https://api.github.com/repos/webmozarts/assert/zipball/11cb2199493b2f8a3b53e7f19068fc6aac760991",
-                "reference": "11cb2199493b2f8a3b53e7f19068fc6aac760991",
-                "shasum": ""
-            },
-            "require": {
-                "ext-ctype": "*",
-                "php": "^7.2 || ^8.0"
-            },
-            "conflict": {
-                "phpstan/phpstan": "<0.12.20",
-                "vimeo/psalm": "<4.6.1 || 4.6.2"
-            },
-            "require-dev": {
-                "phpunit/phpunit": "^8.5.13"
-            },
-            "type": "library",
-            "extra": {
-                "branch-alias": {
-                    "dev-master": "1.10-dev"
-                }
-            },
-            "autoload": {
-                "psr-4": {
-                    "Webmozart\\Assert\\": "src/"
-                }
-            },
-            "notification-url": "https://packagist.org/downloads/",
-            "license": [
-                "MIT"
-            ],
-            "authors": [
-                {
-                    "name": "Bernhard Schussek",
-                    "email": "bschussek@gmail.com"
-                }
-            ],
-            "description": "Assertions to validate method input/output with nice error messages.",
-            "keywords": [
-                "assert",
-                "check",
-                "validate"
-            ],
-            "support": {
-                "issues": "https://github.com/webmozarts/assert/issues",
-                "source": "https://github.com/webmozarts/assert/tree/1.11.0"
-            },
-            "time": "2022-06-03T18:03:27+00:00"
-        }
-    ],
-    "aliases": [],
-    "minimum-stability": "stable",
-    "stability-flags": [],
-    "prefer-stable": false,
-    "prefer-lowest": false,
-    "platform": [],
-    "platform-dev": [],
-    "platform-overrides": {
-        "php": "8.1.99"
-    },
-    "plugin-api-version": "2.3.0"
-}
diff --git a/test/asset/ProjectWithPsalmBaseline/phpunit b/test/asset/ProjectWithPsalmBaseline/phpunit
new file mode 100755
index 00000000..67c63c66
--- /dev/null
+++ b/test/asset/ProjectWithPsalmBaseline/phpunit
@@ -0,0 +1,11 @@
+#!/usr/bin/env php
+<?php
+/**
+ * This file aliases the PHPUnit binary in the current directory.
+ *
+ * Without a discoverable executable, the `roave/infection-static-analysis`
+ * `bin/roave-infection-static-analysis-plugin` executable will otherwise
+ * fail to start up. It also emulates minimal autoloading.
+ */
+
+require __DIR__ . '/../../../vendor/bin/phpunit';
diff --git a/test/asset/ProjectWithPsalmBaseline/phpunit.xml b/test/asset/ProjectWithPsalmBaseline/phpunit.xml
index 04d743b7..c7c04b55 100644
--- a/test/asset/ProjectWithPsalmBaseline/phpunit.xml
+++ b/test/asset/ProjectWithPsalmBaseline/phpunit.xml
@@ -1,8 +1,7 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <phpunit xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-         xsi:noNamespaceSchemaLocation="https://schema.phpunit.de/10.5/phpunit.xsd"
-         bootstrap="vendor/autoload.php"
-         cacheDirectory=".phpunit.cache"
+         xsi:noNamespaceSchemaLocation="../../../vendor/phpunit/phpunit/phpunit.xsd"
+         cacheResult="false"
          executionOrder="depends,defects"
          requireCoverageMetadata="true"
          beStrictAboutCoverageMetadata="true"
diff --git a/test/asset/ProjectWithPsalmBaseline/psalm.xml b/test/asset/ProjectWithPsalmBaseline/psalm.xml
index 4ada57ec..67bae823 100644
--- a/test/asset/ProjectWithPsalmBaseline/psalm.xml
+++ b/test/asset/ProjectWithPsalmBaseline/psalm.xml
@@ -4,15 +4,12 @@
     resolveFromConfigFile="true"
     xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
     xmlns="https://getpsalm.org/schema/config"
-    xsi:schemaLocation="https://getpsalm.org/schema/config vendor/vimeo/psalm/config.xsd"
+    xsi:schemaLocation="https://getpsalm.org/schema/config ../../../vendor/vimeo/psalm/config.xsd"
     findUnusedBaselineEntry="true"
     findUnusedCode="true"
     errorBaseline="psalm-baseline.xml"
 >
     <projectFiles>
         <directory name="src" />
-        <ignoreFiles>
-            <directory name="vendor" />
-        </ignoreFiles>
     </projectFiles>
 </psalm>
diff --git a/test/unit/Roave/InfectionStaticAnalysisTest/ProjectWithBaselineTest.php b/test/unit/Roave/InfectionStaticAnalysisTest/ProjectWithBaselineTest.php
index a7464b69..a08dce4b 100644
--- a/test/unit/Roave/InfectionStaticAnalysisTest/ProjectWithBaselineTest.php
+++ b/test/unit/Roave/InfectionStaticAnalysisTest/ProjectWithBaselineTest.php
@@ -9,20 +9,12 @@
 
 class ProjectWithBaselineTest extends TestCase
 {
-    public function setUp(): void
-    {
-        $process = new Process(['composer', 'install']);
-        $process->setWorkingDirectory(__DIR__ . '/../../../asset/ProjectWithPsalmBaseline');
-
-        $process->mustRun();
-    }
-
     public function testItSpuriouslyReportsMutantAsKilledWithPsalmBaseline(): void
     {
-        $process = new Process([__DIR__ . '/../../../asset/ProjectWithPsalmBaseline/vendor/bin/roave-infection-static-analysis-plugin']);
+        $process = new Process([__DIR__ . '/../../../../bin/roave-infection-static-analysis-plugin']);
         $process->setWorkingDirectory(__DIR__ . '/../../../asset/ProjectWithPsalmBaseline');
 
-        $process->run();
+        $process->mustRun();
 
         $output = $process->getOutput();
 

From 0a26835ba9d7cabaaee4632642d6e37831bc7a2d Mon Sep 17 00:00:00 2001
From: Marco Pivetta <ocramius@gmail.com>
Date: Thu, 8 Feb 2024 19:33:25 +0100
Subject: [PATCH 11/11] Configuring Psalm to find unused code by default

---
 bin/roave-infection-static-analysis-plugin       |  4 ++--
 psalm.xml                                        | 12 +++++++-----
 src/Roave/InfectionStaticAnalysis/CliUtility.php |  6 +-----
 3 files changed, 10 insertions(+), 12 deletions(-)

diff --git a/bin/roave-infection-static-analysis-plugin b/bin/roave-infection-static-analysis-plugin
index 5fda677c..ff680e77 100755
--- a/bin/roave-infection-static-analysis-plugin
+++ b/bin/roave-infection-static-analysis-plugin
@@ -49,7 +49,7 @@ use function var_export;
         ));
     })();
 
-    require_once $projectPath . '/vendor/autoload.php';
+    require_once __DIR__ . '/../vendor/autoload.php';
 
     if (! defined('PSALM_VERSION')) {
         define('PSALM_VERSION', InstalledVersions::getVersion('vimeo/psalm'));
@@ -65,7 +65,7 @@ use function var_export;
 
     RuntimeCaches::clearAll();
 
-    $configuration = $configuration ?? $projectPath;
+    $configuration ??= $projectPath;
 
     if (is_file($configuration)) {
         $config = Config::loadFromXMLFile($configuration, $projectPath);
diff --git a/psalm.xml b/psalm.xml
index 8e8bc202..06954e8a 100644
--- a/psalm.xml
+++ b/psalm.xml
@@ -5,9 +5,11 @@
     xsi:schemaLocation="https://getpsalm.org/schema/config vendor/vimeo/psalm/config.xsd"
     name="Example Psalm config with recommended defaults"
     errorLevel="1"
+    findUnusedBaselineEntry="true"
+    findUnusedCode="true"
 >
     <projectFiles>
-        <directory name="bin"/>
+        <file name="bin/roave-infection-static-analysis-plugin"/>
         <directory name="src"/>
         <directory name="test/unit"/>
         <ignoreFiles>
@@ -63,11 +65,11 @@
             </errorLevel>
         </PropertyNotSetInConstructor>
 
-        <!-- composer/package-versions-deprecated is in use by design -->
-        <DeprecatedClass>
+        <!-- phpunit tests are entry points - they are generally unused -->
+        <UnusedClass>
             <errorLevel type="suppress">
-                <referencedClass name="PackageVersions\Versions"/>
+                <directory name="test"/>
             </errorLevel>
-        </DeprecatedClass>
+        </UnusedClass>
     </issueHandlers>
 </psalm>
diff --git a/src/Roave/InfectionStaticAnalysis/CliUtility.php b/src/Roave/InfectionStaticAnalysis/CliUtility.php
index b6a8b90d..c5c041a7 100644
--- a/src/Roave/InfectionStaticAnalysis/CliUtility.php
+++ b/src/Roave/InfectionStaticAnalysis/CliUtility.php
@@ -12,12 +12,8 @@
 use function substr;
 
 /** @internal */
-final class CliUtility
+abstract class CliUtility
 {
-    private function __construct()
-    {
-    }
-
     /**
      * @param list<non-empty-string> $arguments
      * @param non-empty-string       $argument