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</head><body data-new-gr-c-s-check-loaded="14.1147.0" data-gr-ext-installed=""><table style="width: 100%;">
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<img alt="Lianrong Pu" src="../Lianrong_files/lianrong_small.jpg" height="282"></strong></td> <td style="width: 682px;"><span class="style3"><strong>Lianrong Pu</strong></span><br> <br>
<span class="style4">Professor</span><br class="style4">
<span class="style4"><a href="https://www.cs.sdu.edu.cn/">School of Computer Science and Technology</a></span><br class="style4">
<span class="style4"><a href="https://www.sdu.edu.cn/">Shandong University</a></span><br class="style4">
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<span class="style4"><strong>E-Mail: </strong>lianrongpu AT sdu.edu.cn</span><br class="style4">
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<span class="style4"><strong>Address: </strong>Room 237, N3 Building, Shandong University at Qingdao </span><br class="style4">
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<span class="style4">I am currently a tenure-track professor at the <a href="https://www.cs.sdu.edu.cn/">School of Computer Science and Technology</a>, <a href="https://www.sdu.edu.cn/">the Shandong University</a>. Prior to this, I was a postdoctoral scholar, hosted by <a href="http://acgt.cs.tau.ac.il/">Prof. Ron Shamir</a>, at <a href="https://en-exact-sciences.tau.ac.il/computer">the Blavatnik School of Computer Science</a>, <a href="https://english.tau.ac.il/">the Tel Aviv University</a>. I received my Ph.D. in computer science from <a href="https://www.sdu.edu.cn/">Shandong University</a>, my advisor was <a href="https://www.cs.sdu.edu.cn/info/1070/2797.htm">Prof. Daming Zhu</a> and co-advisor was <a href="https://bioalgorithms.ucsd.edu/">Prof. Pavel Pevzner</a> at <a href="https://ucsd.edu/">UCSD</a>.
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I'm currently seeking Master's/PhD candidates to join my research group. If you're interested, feel free to reach out to me.
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<strong><span class="style3">Education<br></span></strong>
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<li>2012-2018, Ph.D. in Computer Science and Technology, <a href="https://www.sdu.edu.cn/">Shandong University</a>, Qingdao, China.</li>
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<li>2015-2017, Visiting Ph.D. in Computer Science and Engineering, <a href="https://ucsd.edu/">UCSD</a>, San Diego, United States.</li>
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<li>2008-2012, B.S. in Computer Science and Technology, <a href="https://www.sdu.edu.cn/">Shandong University</a>, Jinan, China.</li>
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<strong><span class="style3">Research Interests<br></span></strong>
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<li>Metagenomic Analysis</li>
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<li>Comparative Genomics</li>
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<li>Structure Variation in Human Genome</li>
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<li>Analysis of Deep Sequencing Data</li>
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<strong><span class="style3">Publications<br></span></strong>
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For a complete list of my publications, please see my
<a href="https://scholar.google.ch/citations?user=f-biFNwAAAAJ&hl=en">Google Scholar page</a>.
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<strong><span class="style3">Software<br></span></strong>
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<li>SDquest: A tool for detecting ancient segmental duplications in mammalian genomes. Source code is at <a href="https://github.com/SDquest/SDquest">Github</a>. </li>
<li>3CAC: A 3-way classifier of metagenomic assemblies. Source code is at <a href="https://github.com/Shamir-Lab/3CAC">Github</a>. </li>
<li>4CAC: A standalone 4-way classifier of metagenomic assemblies. Source code is at <a href="https://github.com/Shamir-Lab/4CAC">Github</a>. </li>
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<strong><span class="style3">Academic Services<br></span></strong>
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<li> Program committee of <a href="https://bidma.cpsc.ucalgary.ca/IEEE-BIBM-2023/">BIBM 2023</a>, <a href="https://ieeebibm.org/BIBM2022/">BIBM 2022</a>. </li>
<li> Reviewer of <a href="https://academic.oup.com/nar">Nucleic Acid Research</a>, <a href="https://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=8857">TCBB</a>, <a href="https://academic.oup.com/bib">Briefings in Bioinformatics</a>, <a href="https://recombcg2019.bitbucket.io/">RECOMB-CG 2019</a>, <a href="https://acm-bcb.org/WABI/2021/">WABI 2021</a>, <a href="https://www.cs.cityu.edu.hk/~shuaicli/apbc2017/">APBC 2017</a>, et al. </li>
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<strong><span class="style3">Selected Awards<br></span></strong>
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<li>2023, Taishan Scholars (泰山学者“青年专家”). </li>
<li>2019-2021, PBC Fellowship for Outstanding Postdoctoral Researchers, Israeli Council for Higher Education. </li>
<li>2019-2023, Postdoctoral Fellowship of the Edmond J. Safra Center for Bioinformatics, Tel Aviv University. </li>
<li>2019, ACM SIGBIO Doctoral Dissertation Award, ACM Council in China. </li>
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