BiofilmQ has a catalog of 49 quantitative parameters they compute for biofilm images. We are not copying their cube-based method, but we should absolutely steal their ideas about what to measure and adapt them to our single cell perspective.
Go through their parameter list, identify which ones make sense when computed per-cell instead of per-cube, and add the relevant ones to our neighborhood metrics. Use their thinking, not their implementation.
BiofilmQ has a catalog of 49 quantitative parameters they compute for biofilm images. We are not copying their cube-based method, but we should absolutely steal their ideas about what to measure and adapt them to our single cell perspective.
Go through their parameter list, identify which ones make sense when computed per-cell instead of per-cube, and add the relevant ones to our neighborhood metrics. Use their thinking, not their implementation.