From fe14c39fc347e3e1efe054ca86a3ca9929d06623 Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Fri, 23 Jan 2026 20:26:28 +0000
Subject: [PATCH 1/2] Initial plan


From 72393c44cc3d479e57a41fb6e82714544813b13a Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Fri, 23 Jan 2026 20:28:12 +0000
Subject: [PATCH 2/2] Fix cache ordering: move cache step before download step

Co-authored-by: mdbarnesUCSD <22506723+mdbarnesUCSD@users.noreply.github.com>
---
 .github/workflows/ci.yml | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 93918d5..265486a 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -27,12 +27,6 @@ jobs:
       run: |
         python -m pip install --upgrade pip setuptools packaging
     
-    - name: Download GRCh37.tar.gz if not present
-      run: |
-        if [ ! -f ./src/GRCh37.tar.gz ]; then
-          wget --connect-timeout=10 --tries=20 ftp://alexandrovlab-ftp.ucsd.edu/pub/tools/SigProfilerMatrixGenerator/GRCh37.tar.gz -P ./src/
-        fi
-    
     - name: Cache src directory
       uses: actions/cache@v4
       with:
@@ -41,6 +35,12 @@ jobs:
         restore-keys: |
           ${{ runner.os }}-src-
     
+    - name: Download GRCh37.tar.gz if not present
+      run: |
+        if [ ! -f ./src/GRCh37.tar.gz ]; then
+          wget --connect-timeout=10 --tries=20 ftp://alexandrovlab-ftp.ucsd.edu/pub/tools/SigProfilerMatrixGenerator/GRCh37.tar.gz -P ./src/
+        fi
+    
     - name: Install package with tests
       run: |
         pip install .[tests]