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NAMESPACE
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111 lines (110 loc) · 3.22 KB
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# Generated by roxygen2: do not edit by hand
S3method(print,Distribution)
S3method(summary,Distribution)
export(Distribution)
export(analyze_interactions_percents)
export(batch_compute_gene_distributions_cpp)
export(batch_compute_pvalues_cpp)
export(build_reference)
export(calculate_cluster_mean)
export(calculate_cluster_mean_distribution)
export(calculate_cluster_means_cpp)
export(calculate_cluster_percents)
export(calculate_cluster_percents_cpp)
export(calculate_cluster_quantile)
export(calculate_cluster_quantile_distribution)
export(calculate_cluster_quantiles_cpp)
export(calculate_interaction_strengths_cpp)
export(calculate_interactions_pvalue)
export(calculate_interactions_strength)
export(cauchy_combine)
export(cauchy_combine_cpp)
export(cauchy_combine_files)
export(cauchy_combine_with_stat)
export(check_interactions_by_DEG)
export(cluster_markers_method)
export(combine_complex_distribution)
export(combine_complex_distribution_dt)
export(create_distribution)
export(create_significant_df)
export(digitize_transform_cpp)
export(fast_histogram_cpp)
export(fastccc)
export(fastccc_cauchy)
export(fft_convolve_cpp)
export(get_average_distribution)
export(get_count_data)
export(get_input_data)
export(get_input_data_from_files)
export(get_interactions)
export(get_minimum_distribution)
export(get_minimum_distribution_cpp)
export(get_network_data)
export(get_pmf_from_digit_samples)
export(get_pvalue)
export(get_pvalues_from_pmf_cpp)
export(get_strength_network_data)
export(get_threshold)
export(infer_query)
export(load_reference_config)
export(multiply_distributions_cpp)
export(plot_ccc_chord)
export(plot_ccc_heatmap)
export(plot_ccc_network)
export(statistical_analysis_method)
export(sum_distributions_cpp)
importFrom(Matrix,Matrix)
importFrom(Matrix,colMeans)
importFrom(Matrix,colSums)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Matrix,sparseMatrix)
importFrom(R6,R6Class)
importFrom(Rcpp,sourceCpp)
importFrom(cli,cli_alert_danger)
importFrom(cli,cli_alert_info)
importFrom(cli,cli_alert_success)
importFrom(cli,cli_alert_warning)
importFrom(cli,cli_progress_bar)
importFrom(cli,cli_progress_done)
importFrom(cli,cli_progress_update)
importFrom(data.table,":=")
importFrom(data.table,.BY)
importFrom(data.table,.N)
importFrom(data.table,.SD)
importFrom(data.table,CJ)
importFrom(data.table,as.data.table)
importFrom(data.table,copy)
importFrom(data.table,data.table)
importFrom(data.table,dcast)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(data.table,melt)
importFrom(data.table,rbindlist)
importFrom(data.table,setDT)
importFrom(data.table,setcolorder)
importFrom(data.table,setkey)
importFrom(data.table,setnames)
importFrom(graphics,hist)
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,new)
importFrom(rlang,"%||%")
importFrom(rlang,abort)
importFrom(rlang,inform)
importFrom(rlang,warn)
importFrom(stats,convolve)
importFrom(stats,dnorm)
importFrom(stats,na.omit)
importFrom(stats,pnorm)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,var)
importFrom(utils,globalVariables)
importFrom(utils,packageVersion)
importFrom(utils,read.csv)
importFrom(utils,write.csv)
useDynLib(FastCCCR, .registration = TRUE)