From b5905c16d73b193ac37173d16da123429ece223e Mon Sep 17 00:00:00 2001
From: YertleTurtleGit <34098804+YertleTurtleGit@users.noreply.github.com>
Date: Fri, 12 Jun 2026 00:21:49 +0200
Subject: [PATCH 1/3] upgraded pyo version

---
 Cargo.toml           | 10 +++++-----
 src/graph_pca_lib.rs |  3 ++-
 src/python_lib.rs    |  2 +-
 3 files changed, 8 insertions(+), 7 deletions(-)

diff --git a/Cargo.toml b/Cargo.toml
index 8d1a4ca..4d0bdb6 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -4,11 +4,11 @@ version = "0.2.0"
 edition = "2021"
 
 [dependencies]
-pyo3 = { version = "0.21.1", features = ["extension-module"] }
-nalgebra = "0.32.3"
+pyo3 = { version = "0.29.0", features = ["extension-module"] }
+nalgebra = "0.35.0"
 rayon = "1.8.0"
-kdtree = "0.7.0"
-petgraph = "0.6.4"
+kdtree = "0.8.0"
+petgraph = "0.8.3"
 
 [lib]
 name = "graph_pca"
@@ -19,4 +19,4 @@ crate-type = ["cdylib"]
 codegen-units = 1
 lto = "fat"
 panic = "abort"
-strip = "symbols"
\ No newline at end of file
+strip = "symbols"
diff --git a/src/graph_pca_lib.rs b/src/graph_pca_lib.rs
index f3f90fc..7a52146 100644
--- a/src/graph_pca_lib.rs
+++ b/src/graph_pca_lib.rs
@@ -127,7 +127,7 @@ fn get_pca(eigenvalues: &[f64]) -> Vec<f64> {
         .collect()
 }
 
-#[pyclass]
+#[pyclass(from_py_object)]
 #[derive(Clone, PartialEq)]
 pub enum Feature {
     Eigenvalues,
@@ -198,3 +198,4 @@ pub fn calculate_features(
 
     vectors_per_feature
 }
+
diff --git a/src/python_lib.rs b/src/python_lib.rs
index e993875..20600d8 100644
--- a/src/python_lib.rs
+++ b/src/python_lib.rs
@@ -3,7 +3,7 @@ use pyo3::prelude::*;
 mod graph_pca_lib;
 
 #[pymodule]
-fn graph_pca(_py: Python<'_>, module: &PyModule) -> PyResult<()> {
+fn graph_pca(module: &Bound<'_, PyModule>) -> PyResult<()> {
     module.add_function(wrap_pyfunction!(calculate_features, module)?)?;
     module.add_class::<Feature>()?;
     Ok(())

From 8d653c90062207d8d43dc75541d35a70c02dfaac Mon Sep 17 00:00:00 2001
From: YertleTurtleGit <34098804+YertleTurtleGit@users.noreply.github.com>
Date: Fri, 12 Jun 2026 00:23:48 +0200
Subject: [PATCH 2/3] Add files via upload

---
 Cargo.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Cargo.toml b/Cargo.toml
index 4d0bdb6..1238af5 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "graph_pca"
-version = "0.2.0"
+version = "0.3.0"
 edition = "2021"
 
 [dependencies]

From ceb497d5d66c339d5bb8d41b45d1e4169ca14561 Mon Sep 17 00:00:00 2001
From: YertleTurtleGit <34098804+YertleTurtleGit@users.noreply.github.com>
Date: Fri, 12 Jun 2026 00:25:08 +0200
Subject: [PATCH 3/3] Update pr-test.yml

---
 .github/workflows/pr-test.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/pr-test.yml b/.github/workflows/pr-test.yml
index 4bc1b12..437b729 100644
--- a/.github/workflows/pr-test.yml
+++ b/.github/workflows/pr-test.yml
@@ -16,6 +16,7 @@ jobs:
           pip install nbconvert
           pip install black_nbconvert
           pip install markupsafe==2.0.1
+          pip install toml
           if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
           git config --local user.email "action@github.com"
           git config --local user.name "GitHub Action"