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Difficulty running test program #3

@grace-yun-liu

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@grace-yun-liu

Hi! I'm having a ton of trouble getting the test analysis to run. I was careful to git clone the fandersch-dev branch, as follows:

git clone -b fandersch_dev https://github.com/ZuberLab/crispr-mageck-nf.git
cd crispr-mageck-nf
./test

When I attempt to run the analysis, my system says that I am using revision: f2a4af8b55, which I can't even find on the list of past commits.

I then get a horrible list of error messages as the process mageck () fails relentlessly. Eventually, the entire test program gives up and tells me "--> FAILED: Inconsistent Results!" after retrying the mageck process several times with different contrasts:

[32/f6bcd9] process > mageck (test_cnv_incorrect)    [100%] 7 of 7, failed: 6...
[3c/acee72] process > postprocess (test_cnv_missing) [100%] 1 of 1
[06/54a15f] NOTE: Process `mageck (test_normal)` terminated with an error exit status (1) -- Execution is retried (1)
[42/2b01ec] NOTE: Process `mageck (test_cnv_incorrect)` terminated with an error exit status (1) -- Execution is retried (1)
[bf/671939] NOTE: Process `mageck (test_normal)` terminated with an error exit status (1) -- Execution is retried (2)
[3b/66647b] NOTE: Process `mageck (test_cnv_incorrect)` terminated with an error exit status (1) -- Execution is retried (2)
[2a/ef6148] NOTE: Process `mageck (test_normal)` terminated with an error exit status (1) -- Execution is retried (3)
Error executing process > 'mageck (test_normal)'

etc. etc.

Do you have any idea what's going wrong and how I might fix it?

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