geo_utils

GEO / SRA Utilities

Scripts for fetching metadata and raw/processed data from NCBI GEO and SRA.

• 01_geo_to_sra.sh — Convert a GEO accession to SRA Run Table + Sample Info CSV
• 02_download_fastq.sh — Download SRA runs and extract to FASTQ
• 02_download_geo_processed.sh — Mirror the GEO supplementary (processed) file directory

These scripts are organism- and modality-agnostic: any GEO-deposited dataset works.