Genome mapping doesn't work with large genomes when converting to bam

[KristinaGagalova]

Reference to issues here

Minimap multi-part index doesn't output SQ fields

Options: check if mapping can be run without index output -d.

[KristinaGagalova]

Error message

Command error:
  [M::mm_idx_gen::432.399*1.83] collected minimizers
  [M::mm_idx_gen::462.002*2.76] sorted minimizers
  [WARNING] For a multi-part index, no @SQ lines will be outputted. Please use --split-prefix

Some ideas to test:
idea1