In your example, https://github.com/cmohl2013/permutation_test, it seems that there can be multiple conditions, but in practice there are lines that restricts to only 2 conditions:
https://github.com/cmohl2013/permutation_test/blob/master/permutation_test/permtest.py#L83-L85
https://github.com/cmohl2013/permutation_test/blob/master/permutation_test/csv_parser.py#L57-L59
It is very strange, you do even have a MULTI_COMP_CORR parameter. Could you put an example of how to run a multiple comparison? and maybe explain the output a bit more. With three conditions, there is 3 contrasts: A-B, B-C, A-C
In your example,
https://github.com/cmohl2013/permutation_test, it seems that there can be multiple conditions, but in practice there are lines that restricts to only 2 conditions:https://github.com/cmohl2013/permutation_test/blob/master/permutation_test/permtest.py#L83-L85
https://github.com/cmohl2013/permutation_test/blob/master/permutation_test/csv_parser.py#L57-L59
It is very strange, you do even have a MULTI_COMP_CORR parameter. Could you put an example of how to run a multiple comparison? and maybe explain the output a bit more. With three conditions, there is 3 contrasts: A-B, B-C, A-C