Not sure in which step would be better to manually clean the segmentation, but it seems to that the output of the `cruise` is the best target for manual adjustment.
I would propose to split the `extract brain region` + `cruise` steps to the actual layering last step.
Similarly to what it happens in the segmentation script fro `skullstrip` and `segmentation`
Is there an existing issue for this?
New feature
Unclear documentation
No response