As discussed starting a discussion thread on how files will be renamed into BIDS derivatives.
One thing to clarify: the final output of a preprocessing pipeline (for func or anat) MUST be described as desc-preproc. This is done to facilitate knowing which file to "grab" no matter what software is used afterwards.
Also "provenance tracking" knowing the "parent" files of given file can be done in BIDS derivatives in the side-car json files, so it might not have to be encoded in the filename.
@mohmdrezk @marcobarilari @CerenB #
TODO
func
| SPM |
BIDS |
| s6usub-01_task-auditory_bold.nii |
sub-01_task-auditory_space-individual_desc-smth6_bold.nii |
| s6rsub-01_task-auditory_bold.nii |
sub-01_task-auditory_space-individual_desc-smth6_bold.nii |
| s6uasub-01_task-auditory_bold.nii |
sub-01_task-auditory_space-individual_desc-smth6_bold.nii |
| s6rasub-01_task-auditory_bold.nii |
sub-01_task-auditory_space-individual_desc-smth6_bold.nii |
| s6wusub-01_task-auditory_bold.nii |
sub-01_task-auditory_space-IXI549Space_desc-smth6_bold.nii |
| s6wrsub-01_task-auditory_bold.nii |
sub-01_task-auditory_space-IXI549Space_desc-smth6_bold.nii |
| s6wuasub-01_task-auditory_bold.nii |
sub-01_task-auditory_space-IXI549Space_desc-smth6_bold.nii |
| s6wrasub-01_task-auditory_bold.nii |
sub-01_task-auditory_space-IXI549Space_desc-smth6_bold.nii |
| s6sub-01_task-auditory_bold.nii |
sub-01_task-auditory_desc-smth6_bold.nii |
| rp_sub-01_task-auditory_bold.nii |
sub-01_task-auditory_desc-confounds_regressors.tsv |
| rp_asub-01_task-auditory_bold.nii |
sub-01_task-auditory_desc-confounds_regressors.tsv |
| usub-01_task-auditory_bold.nii |
sub-01_task-auditory_space-individual_desc-preproc_bold.nii |
| uasub-01_task-auditory_bold.nii |
sub-01_task-auditory_space-individual_desc-preproc_bold.nii |
| rsub-01_task-auditory_bold.nii |
sub-01_task-auditory_space-individual_desc-preproc_bold.nii |
| rasub-01_task-auditory_bold.nii |
sub-01_task-auditory_space-individual_desc-preproc_bold.nii |
| std_usub-01_task-auditory_bold.nii |
sub-01_task-auditory_space-individual_desc-std_bold.nii |
| std_uasub-01_task-auditory_bold.nii |
sub-01_task-auditory_space-individual_desc-std_bold.nii |
anat
| SPM |
BIDS |
| wc1sub-01_T1w.nii |
sub-01_space-IXI549Space_res-bold_label-GM_probseg.nii |
| wc2sub-01_T1w.nii |
sub-01_space-IXI549Space_res-bold_label-WM_probseg.nii |
| wc3sub-01_T1w.nii |
sub-01_space-IXI549Space_res-bold_label-CSF_probseg.nii |
| rc1sub-01_T1w.nii |
sub-01_space-individual_res-bold_label-GM_probseg.nii |
| rc2sub-01_T1w.nii |
sub-01_space-individual_res-bold_label-WM_probseg.nii |
| rc3sub-01_T1w.nii |
sub-01_space-individual_res-bold_label-CSF_probseg.nii |
| wmsub-01_T1w.nii |
sub-01_space-IXI549Space_res-r1pt0_T1w.nii |
| wmsub-01_desc-skullstripped_T1w.nii |
sub-01_space-IXI549Space_res-r1pt0_desc-preproc_T1w.nii |
| msub-01_desc-skullstripped_T1w.nii |
sub-01_space-individual_desc-preproc_T1w.nii |
| wsub-01_desc-skullstripped_T1w.nii |
sub-01_space-individual_res-r1pt0_desc-preproc_T1w.nii |
| msub-01_space-individual_desc-something_label-brain_mask.nii |
sub-01_space-individual_label-brain_mask.nii |
| c1sub-01_T1w.surf.gii |
sub-01_desc-pialsurf_T1w.gii |
Not listed: some of the outputs of the segmentation done by the ALI toolbox for lesion detection
As discussed starting a discussion thread on how files will be renamed into BIDS derivatives.
One thing to clarify: the final output of a preprocessing pipeline (for func or anat) MUST be described as
desc-preproc. This is done to facilitate knowing which file to "grab" no matter what software is used afterwards.Also "provenance tracking" knowing the "parent" files of given file can be done in BIDS derivatives in the side-car json files, so it might not have to be encoded in the filename.
@mohmdrezk @marcobarilari @CerenB #
TODO
runand thesesentityfunc
anat
Not listed: some of the outputs of the segmentation done by the ALI toolbox for lesion detection