Dear developers,
There is likely a bug with the model assignment for PAUP on the level of commands.
The example is below:
Commands:
phyml -i atpA -m 000000 -f m -v 0 -a 0 -c 1 -o tlr
raxmlHPC-SSE3 -s atpA -c 1 -m GTRCATX --JC69 -n EXEC_NAME -p PARSIMONY_SEED
raxml-ng --msa atpA --model F81
paup -s atpA
iqtree -s atpA -m F81
Dear developers,
There is likely a bug with the model assignment for PAUP on the level of commands.
The example is below:
Commands: