One of the issues I'm noticing is that since GK is structured around what features are exposed from annotations (eg, UTRs had to be added manually as a table), it limits general querying of stuff.
If possible, it would be nice if a user could specify which features to parse and build into tables to query. One of the issues with this is that GK fixes up missing/broken hierarchical information (gene->transcript->exon|intron) where as a general one won't.
One of the issues I'm noticing is that since GK is structured around what features are exposed from annotations (eg, UTRs had to be added manually as a table), it limits general querying of stuff.
If possible, it would be nice if a user could specify which features to parse and build into tables to query. One of the issues with this is that GK fixes up missing/broken hierarchical information (gene->transcript->exon|intron) where as a general one won't.