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[Meta] Autosolver cleanup #907

@luxaritas

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@luxaritas

Tracking future improvements we deemed non-critical for merging the initial implementation

From reviews on #904

  • Clean up Ribotree patchfile
  • See if we can get the ribotree wheel to output to the correct location instead of needing to manually copy it

From reviews on #905

  • Integrate Vienna 2.4 compile step into cmake(/patch.sh)
  • Rename fold to solve or optimize
  • See if we can remove the pyodide version # from the wheel URL so it doesnt break on update

From reviews on #906

  • Investigate aligning SolverManager registration more closely with FolderManager/LayoutManager
  • connect --> connectNotify simplification?
  • Remove sync/async distinction
  • Investigate promise cleanup
  • Investigate CDN + vendored dts --> npm for pyodide
  • Investigate improved handling of biopython
  • Throw instead of warn
  • Investigate getting codon sequence from puzzle definition
  • Surface beam length, jitter, and temperature

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