The uSD_nCS line passes to ground through RN6 & RN8. As a result this overcomes the internal pull-up for D4.
For my application I needed all of inputs as pull-up. To work around this I removed RN8 as I did not need uSD access.
My recommendation to improve this is to add another pair of pads with a trace between them like the I2C isolate that allows isolation of the D4 line between RN6D and the microcontoller.
The uSD_nCS line passes to ground through RN6 & RN8. As a result this overcomes the internal pull-up for D4.
For my application I needed all of inputs as pull-up. To work around this I removed RN8 as I did not need uSD access.
My recommendation to improve this is to add another pair of pads with a trace between them like the I2C isolate that allows isolation of the D4 line between RN6D and the microcontoller.