extract_clusters shifting reading frame

[McClenagoat]

When I use the extract_clusters function on a .json session file after a local search the extracted cluster files are missing a nucleotide or have an extra nucleotide depending on whether the gene is in forward or reverse.
This shifts the gene out of reading frame and must be manually fixed in a different program.
Is there a solution to this?

[mvalvano]

I found the same problem and have not found a way to solve it. It happens with libraries made of .gbk sequences or libraries made with .gff and .faa files. I hope this gets resolved. In the meantime, I have been automatically annotating the extracted clusters with Bakta, but this is not ideal.