Intro-to-R-Quarto/_quarto.yml at main · hbctraining/Intro-to-R-Quarto · GitHub

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project:
  type: website
  output-dir: docs
  resources:
    - img/
    - css/
    - slides/


website:
  title: "Introduction to R"
  google-analytics: G-68JBPLLNLG
  page-footer: >
      This lesson has been developed by members of the teaching team at the [Harvard Chan Bioinformatics Core (HBC)](http://bioinformatics.sph.harvard.edu/). <br>
      These are open access materials distributed under the terms of the [Creative Commons Attribution license](https://creativecommons.org/licenses/by/4.0/) (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. <br>
      Some materials used are adapted from work that is Copyright © [Data Carpentry](http://datacarpentry.org/). All Data Carpentry instructional material is made available under the [Creative Commons Attribution license](https://creativecommons.org/licenses/by/4.0/) (CC BY 4.0).


  navbar:
    left:
      - text: "Schedule"
        href: lessons/schedule.qmd
    right:
      - text: "HBC"
        href: https://bioinformatics.sph.harvard.edu/
      - text: "GitHub"
        href: https://github.com/hbctraining/intro_r_rmd
      - text: "Contact us"
        href: mailto:hbctraining@hsph.harvard.edu


  sidebar:
    title: "Lessons"      # Optional title above the sidebar
    style: "docked"       # Sidebar is docked to the left
    collapse-level: 1     # At what header level to start collapsing
    # contents: auto      # Creates automatic TOC from page headers (no sections)
    contents:
      - section: "Day 1:"
        contents:
          - lessons/01b_introR-R-and-RStudio.qmd
      - section: "Day 1 Self-learning:"
        contents:
          - lessons/02_introR-syntax-and-data-structures.qmd
          - lessons/03_introR-functions-and-arguments.qmd
          - lessons/06_reading_and_data_inspection.qmd

      - section: "Day 2"
        contents:
          - lessons/Day2_activities.qmd
          - lessons/05_introR-data-wrangling.qmd
      - section: "Day 2 Self-learning"
        contents:
          - lessons/04_introR_packages.qmd
          - lessons/07_introR-data-wrangling2.qmd
          - lessons/08_identifying-matching-elements.qmd
          - lessons/09_reordering-to-match-datasets.qmd
          - lessons/10_setting_up_to_plot.qmd

      - section: "Day 3"
        contents:
          - lessons/Day3_activities.qmd
          - lessons/11_ggplot2.qmd
      - section: "Day 3 Self-learning"
        contents:
          - lessons/11b_Custom_Functions_ggplot2.qmd
          - lessons/12_boxplot_exercise.qmd
          - lessons/13_exporting_data_and_plots.qmd
          - lessons/14_finding_help.qmd
          - lessons/15_tidyverse.qmd

      - section: "Day 4"
        contents:
          - lessons/Day4_activities.qmd


format:
  html:
    theme: simplex
    css: css/styles.css
    fig-align: "center"
    toc: true
    number-sections: false
    code-block-bg: true
    code-copy: true      # enables copy button (default in most themes)
    code-tools: true     # enables the copy button!
    code-line-wrap: wrap
    prompt: true

# Global Execution Defaults
execute:
  echo: true               # show code
  eval: true               # run code
  warning: false           # show warnings
  error: false             # show errors
  message: false           # show messages
  prompt: true