makefile

RSCRIPT = Rscript
PLOT_SETTINGS = scripts/common/setup-ggplot-theme.R
TEX_FILES = $(wildcard tex-input/*.tex) \
	$(wildcard tex-input/*/*.tex) \
	$(wildcard tex-input/*/*/*.tex)

# useful compound make components
PLOTS = plots
RDS = rds
SCRIPTS = scripts

# if you wildcard the all-target, then nothing will happen if the target doesn't
# exist (no target). hard code the target.
# CHANGE THIS:
BASENAME = report-template
WRITEUP = $(BASENAME).pdf

all : $(WRITEUP)

clean : 
	trash $(BASENAME).aux $(BASENAME).out $(BASENAME).pdf $(BASENAME).tex

# knitr is becoming more picky about encoding, specify UTF-8 input
$(WRITEUP) : $(wildcard *.rmd) $(TEX_FILES)
	$(RSCRIPT) -e "rmarkdown::render(input = Sys.glob('*.rmd'), encoding = 'UTF-8')"