From 50803f11f3a2aee54b6f2fd81cd1764613eb0ef9 Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Fri, 6 Feb 2026 16:34:03 +0000
Subject: [PATCH 1/2] Initial plan


From 60ad7af7217b617d88b673168b74cb9f2021f2a6 Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Fri, 6 Feb 2026 16:35:44 +0000
Subject: [PATCH 2/2] Create Schaefer2018-12m data directory with README

Co-authored-by: KatoPitipat-Teerakitinat <256167484+KatoPitipat-Teerakitinat@users.noreply.github.com>
---
 Schaefer2018-12m/README.md | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)
 create mode 100644 Schaefer2018-12m/README.md

diff --git a/Schaefer2018-12m/README.md b/Schaefer2018-12m/README.md
new file mode 100644
index 0000000..27ec30b
--- /dev/null
+++ b/Schaefer2018-12m/README.md
@@ -0,0 +1,22 @@
+# Schaefer2018-12m Data Directory
+
+This directory contains structural connectome data using the Schaefer 2018 atlas with 400 parcels (12 months).
+
+## Expected File Format
+
+This directory should contain TSV (tab-separated values) files in the format:
+- `sub-{ID}_Schaefer2018-12m.tsv`
+
+Each file should be a 400x400 matrix representing structural connectivity between brain regions for individual subjects.
+
+## Usage
+
+This data directory is used by the following scripts:
+1. `1) Merge_All_Shaeffler.py` - Merges all subject data
+2. `2) Indivudual visualization of binarized shaeffler.py` - Visualizes individual patient connectomes
+3. `3) Create Group_Sum_Binarized_Schaefer400.py` - Creates group-level summaries
+4. `5) Check_ROI_Regions.py` - Checks ROI region mappings
+
+## Data Source
+
+Place your Schaefer atlas connectivity matrices here before running the analysis scripts.