From 74bc28c48f7e91904b3aec27e6782b37d7f00c0a Mon Sep 17 00:00:00 2001
From: buehlere <buehlere77@gmail.com>
Date: Tue, 17 Mar 2026 15:53:05 -0400
Subject: [PATCH 1/3] use map for legacy app environments

we need to specify a different execution environment for XS heme.
---
 ridgeback/settings.py                         | 14 +++++++++++---
 submitter/toil_submitter/toil_jobsubmitter.py |  7 +++++--
 2 files changed, 16 insertions(+), 5 deletions(-)

diff --git a/ridgeback/settings.py b/ridgeback/settings.py
index 666e1ae5..354a4927 100644
--- a/ridgeback/settings.py
+++ b/ridgeback/settings.py
@@ -10,6 +10,7 @@
 https://docs.djangoproject.com/en/2.2/ref/settings/
 """
 
+import json
 import os
 
 # Build paths inside the project like this: os.path.join(BASE_DIR, ...)
@@ -326,9 +327,16 @@
 SKIP_THE_QUEUE_JOBS = ("ARGOS", "ACCESS_HEME", "ACCESS", "CMO-CH")
 
 # ACCESS LEGACY INFO
-ACCESS_LEGACY_APP = os.environ.get("ACCESS_LEGACY_APP", "access-pipeline")
-ACCESS_LEGACY_CONDA_ENV = os.environ.get(
-    "ACCESS_LEGACY_CONDA_ENV", "/usersoftware/core005/access/production/V1/micromamba/envs/ACCESS-voyager/bin"
+ACCESS_LEGACY_APP_ENV_MAP = json.loads(
+    os.environ.get(
+        "ACCESS_LEGACY_APP_ENV_MAP",
+        json.dumps(
+            {
+                "access-pipeline": "/usersoftware/core005/access/production/V1/micromamba/envs/ACCESS-voyager/bin",
+                "access_heme": "/usersoftware/core005/accessH/development/envs/ACCESS-HEME-voyager/bin"
+            }
+        ),
+    )
 )
 
 SHELL_PLUS = "ipython"
diff --git a/submitter/toil_submitter/toil_jobsubmitter.py b/submitter/toil_submitter/toil_jobsubmitter.py
index bffa2ace..b64f7eda 100644
--- a/submitter/toil_submitter/toil_jobsubmitter.py
+++ b/submitter/toil_submitter/toil_jobsubmitter.py
@@ -89,8 +89,11 @@ def get_submit_command(self):
         env["TMP"] = self.job_tmp_dir
         env["TMPDIR"] = self.job_tmp_dir
         env[self.batch_system_args_env] = toil_batch_system_args.strip()
-        if settings.ACCESS_LEGACY_APP in self.app.github.lower():
-            env["PATH"] = f"{settings.ACCESS_LEGACY_CONDA_ENV}:{os.environ.get('PATH')}"
+        github_lower = self.app.github.lower()
+        for app_key, conda_env in settings.ACCESS_LEGACY_APP_ENV_MAP.items():
+            if app_key in github_lower:
+                env["PATH"] = f"{conda_env}:{os.environ.get('PATH')}"
+                break
         return command_line, self._leader_args(), log_path, self.job_id, self.partition, env
 
     def get_commandline_status(self, cache):

From a7948a1e89c6ced0f3bd6fe14292ff1970b3a015 Mon Sep 17 00:00:00 2001
From: buehlere <buehlere77@gmail.com>
Date: Tue, 17 Mar 2026 15:53:55 -0400
Subject: [PATCH 2/3] format

---
 ridgeback/settings.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/ridgeback/settings.py b/ridgeback/settings.py
index 354a4927..29d88539 100644
--- a/ridgeback/settings.py
+++ b/ridgeback/settings.py
@@ -333,7 +333,7 @@
         json.dumps(
             {
                 "access-pipeline": "/usersoftware/core005/access/production/V1/micromamba/envs/ACCESS-voyager/bin",
-                "access_heme": "/usersoftware/core005/accessH/development/envs/ACCESS-HEME-voyager/bin"
+                "access_heme": "/usersoftware/core005/accessH/development/envs/ACCESS-HEME-voyager/bin",
             }
         ),
     )

From 545b14d4387648c948c52b73b0b4205dabce7bbd Mon Sep 17 00:00:00 2001
From: Sinisa Ivkovic <sinisa.ivkovic@gmail.com>
Date: Thu, 19 Mar 2026 10:20:26 -0400
Subject: [PATCH 3/3] Version bump 2.1.0

---
 ridgeback/__init__.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/ridgeback/__init__.py b/ridgeback/__init__.py
index 8c0d5d5b..9aa3f903 100644
--- a/ridgeback/__init__.py
+++ b/ridgeback/__init__.py
@@ -1 +1 @@
-__version__ = "2.0.0"
+__version__ = "2.1.0"