Command Line Interface does not work on windows

[emernic]

I am using OpenCFU version 3.9.0 on windows 10. The GUI version works beautifully, but when running it from the command line I only get the following output (regardless of how I fiddle with the parameters)...

IsValid,X,Y,ROI,Colour_group,N_in_clust,Area,Radius,Hue,Saturation,Rmean,Gmean,Bmean,Rsd,Gsd,Bsd

For example, running opencfu -i H.png gives this output, where H.png is one of the opencfu sample images.

Update: The linux version seems to be working fine from command line

[qgeissmann]

Hey, thanks for reporting the issue! Yes, I never got to test the windows CLI much, and my windows users generally only use the ROI. I am unlikely to have the resources to fix that any time soon I am afraid :(. I hope it still works for you to use the CLI on linux...

[emernic]

Thanks for responding! The linux version suits most of our needs, but we are considering including a call to OpenCFU in the code for a manuscript we are working on, and it would be nice if others could run the script on windows without issues. There's a faint possibility that we might be able to work on fixing the windows CLI and submit a pull request. Do you have any tips on where to look in the source code to resolve the issues?