seqview-web-docker-public/docker-compose.yml at main · seqcode/seqview-web-docker-public · GitHub

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version: '3.7'

services:
  seqview:
    build: .
    command: bash /entrypoints/entrypoint.sh
    volumes:
      - ./src/genome-browser:/usr/src/seqview/
      - ./entrypoints:/entrypoints
      - ./static:/usr/src/seqview/static/
    environment:
      - "DEBUG=${DEBUG}"
      - "HOST=${HOST}"
      - "SECRET_KEY=${SECRET_KEY}"
      - "DJANGO_PWORD=${DJANGO_PWORD}"
      - "DJANGO_SUPERUSER_USERNAME=${DJANGO_SUPERUSER_USERNAME}"
      - "DJANGO_SUPERUSER_PASSWORD=${DJANGO_SUPERUSER_PASSWORD}"
    expose:
      - 8000
    networks:
      - main
    depends_on:
      - db
    container_name: seqview
  db:
    build:
      context: .
      dockerfile: Dockerfile_mysql
    environment:
      - "DJANGO_HOST=${DJANGO_HOST}"
      - "DJANGO_USER=${DJANGO_USER}"
      - "DJANGO_PWORD=${DJANGO_PWORD}"
      - "MYSQL_ROOT_PASSWORD=${MYSQL_ROOT_PASSWORD}"
    volumes:
      - ./schemas:/docker-entrypoint-initdb.d/:ro
    networks:
      - main
    container_name: db
  nginx:
    build:
      context: .
      dockerfile: Dockerfile_nginx
    volumes:
      - ./nginx.conf:/etc/nginx/nginx.conf:ro
      - ./fastcgi_params:/etc/nginx/fastcgi_params
      - ./static:/usr/share/nginx/html/static
      - ./resources:/usr/share/nginx/html/resources
      - ./src/upload:/usr/share/nginx/html/scripts
    ports:
      - "8000:80"
    depends_on:
      - seqview
    networks:
      - main
    container_name: nginx
  higlass:
    build:
      context: .
      dockerfile: Dockerfile_higlass
    devices:
      - "/dev/fuse:/dev/fuse"
    cap_add:
      - SYS_ADMIN
    command: bash /mysql-entrypoints/higlass-entrypoint.sh
    volumes:
      - ./src/higlassWrapper:/usr/src/higlassWrapper
      - ./entrypoints:/mysql-entrypoints
      - ./hg-data:/data
      - ./hg-tmp:/tmp
    expose:
      - 80
    ports:
      - "9000:9000"
    networks:
      - main
    container_name: higlass
  fcgiwrap:
    build:
      context: .
      dockerfile: Dockerfile_fcgiwrap
    volumes:
      - ./src/upload:/usr/share/nginx/html/scripts
    expose:
      - 9001
    networks:
      - main
    container_name: fcgiwrap
networks:
  main: