From c83b9773055b82d54e89c6737f8a0530b286c234 Mon Sep 17 00:00:00 2001
From: dealz101 <dealz101@hpc-login7.hilbert.hpc.uni-duesseldorf.de>
Date: Thu, 11 Jul 2019 11:42:33 +0200
Subject: [PATCH] =?UTF-8?q?add=20chmod=20g+w=20*=20to=20rule=20merge=5Fvcf?=
 =?UTF-8?q?s=20after=20testing=20i=20got=20this=20mode=20of=20=E2=80=98/ho?=
 =?UTF-8?q?me/dealz101/gpfs/Intermediate/160=5Fmerge=5Fvcfs/Keimbahn/KB023?=
 =?UTF-8?q?0.fpcorr.snp=5Findel.vcf=E2=80=99=20changed=20from=200644=20(rw?=
 =?UTF-8?q?-r--r--)=20to=200664=20(rw-rw-r--)=20i=20will=20apply=20this=20?=
 =?UTF-8?q?change=20to=20all=20rule=20at=20a=20shell=20call?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 rules/varscan/Snakefile | 1 +
 1 file changed, 1 insertion(+)

diff --git a/rules/varscan/Snakefile b/rules/varscan/Snakefile
index 23764d45..37f93c28 100644
--- a/rules/varscan/Snakefile
+++ b/rules/varscan/Snakefile
@@ -363,6 +363,7 @@ rule merge_vcfs:
         " {input.indel}"
         ' > {output}'
         " 2> {log}"
+        " && chmod -v g+w {output} 2>> {log}"
 
         # #merge the vcfs
         # echo merging vcfs for $OUTPUTBASENAME