#include "../../../include/dealIIheaders.h"#include "parameters.h"#include "residuals.h"#include "residuals.h"#include "../../../src/models/diffusion/CH.h"#include "ICs_and_BCs.h"| #define | hAdaptivity true |
| #define | maxRefinementLevel (refineFactor) |
| #define | maxRefinementLevel (refineFactor) |
| #define | minRefinementLevel (0) |
| #define maxRefinementLevel (refineFactor) | +#define maxRefinementLevel (refineFactor) |
| #define maxRefinementLevel (refineFactor+1) | +#define maxRefinementLevel (refineFactor+1) |
| #define rcxV (constV(-McV*timeStep)*(cx*((1.0-hV)*faccV+hV*fbccV)+nx*hnV*(fbcV-facV))) | +#define rcxV (constV(-McV*timeStep)*(cx*((1.0-hV)*faccV+hV*fbccV)+nx*hnV*(fbcV-facV))) |
| #define rnV (n-constV(timeStep*MnV)*(fbV-faV)*hnV) | +#define rnV (n-constV(timeStep*MnV)*(fbV-faV)*hnV) |
| #define numOutputs 10 | +
| #define outputCondition "EQUAL_SPACING" | +
| #define outputList {} | +
| #define skipOutputSteps 2000 | +#define skipPrintSteps 10 |
| #define rcxV (constV(-McV*timeStep)*(cx*((1.0-hV)*faccV+hV*fbccV)+nx*hnV*(fbcV-facV))) | +#define rcxV (constV(-McV*timeStep)*(cx*((1.0-hV)*faccV+hV*fbccV)+nx*hnV*(fbcV-facV))) |
| #define rnV (n-constV(timeStep*MnV)*(fbV-faV)*hnV) | +#define rnV (n-constV(timeStep*MnV)*(fbV-faV)*hnV) |
| #define rnxV (constV(timeStep*MnV)*(-aniso+constV(delta2)*biharmx)) | +#define rnxV (constV(timeStep*MnV)*(-aniso+constV(delta2)*biharmx)) |
| #define numOutputs 10 | +
| #define outputCondition "EQUAL_SPACING" | +
| #define outputList {} | +
| #define skipOutputSteps 2000 | +#define skipPrintSteps 10 |
|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
Go to the source code of this file.
++Classes | |
| class | InitialCondition< dim > |
| class | InitialConditionVec< dim > |
+ 1.8.10
+
+
+
diff --git a/html/_c_hi_ma_d__benchmark1a_2_i_cs__and___b_cs_8h_source.html b/html/_c_hi_ma_d__benchmark1a_2_i_cs__and___b_cs_8h_source.html
new file mode 100644
index 000000000..264f0af4b
--- /dev/null
+++ b/html/_c_hi_ma_d__benchmark1a_2_i_cs__and___b_cs_8h_source.html
@@ -0,0 +1,200 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/_c_hi_ma_d__benchmark1a_2equations_8h.html b/html/_c_hi_ma_d__benchmark1a_2equations_8h.html
new file mode 100644
index 000000000..eb89973db
--- /dev/null
+++ b/html/_c_hi_ma_d__benchmark1a_2equations_8h.html
@@ -0,0 +1,348 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
Go to the source code of this file.
++Macros | |
| #define | num_var 2 |
| #define | variable_name {"c", "mu"} |
| #define | variable_type {"SCALAR", "SCALAR"} |
| #define | variable_eq_type {"PARABOLIC", "PARABOLIC"} |
| #define | need_val {true, true} |
| #define | need_grad {true, true} |
| #define | need_hess {false, false} |
| #define | need_val_residual {true, true} |
| #define | need_grad_residual {true, true} |
| #define | McV 5.0 |
| #define | KcV 2.0 |
| #define | fV (5.0*(c-0.3)*(c-0.3)*(c-0.7)*(c-0.7)) |
| #define | fcV (5.0*(2.0*(c-0.3)*(c-0.7)*(c-0.7)+2.0*(c-0.3)*(c-0.3)*(c-0.7))) |
| #define | rmuV (fcV) |
| #define | rmuxV (constV(KcV)*cx) |
| #define | rcV (c) |
| #define | rcxV (constV(-McV*timeStep)*mux) |
| #define fcV (5.0*(2.0*(c-0.3)*(c-0.7)*(c-0.7)+2.0*(c-0.3)*(c-0.3)*(c-0.7))) | +
| #define fV (5.0*(c-0.3)*(c-0.3)*(c-0.7)*(c-0.7)) | +
| #define KcV 2.0 | +
| #define McV 5.0 | +
| #define need_grad {true, true} | +
| #define need_grad_residual {true, true} | +
| #define need_hess {false, false} | +
| #define need_val {true, true} | +
| #define need_val_residual {true, true} | +
| #define num_var 2 | +
| #define rcV (c) | +
| #define rmuV (fcV) | +
| #define variable_eq_type {"PARABOLIC", "PARABOLIC"} | +
| #define variable_name {"c", "mu"} | +
| #define variable_type {"SCALAR", "SCALAR"} | +
+ 1.8.10
+
+
+
diff --git a/html/_c_hi_ma_d__benchmark1a_2equations_8h_source.html b/html/_c_hi_ma_d__benchmark1a_2equations_8h_source.html
new file mode 100644
index 000000000..965e4be75
--- /dev/null
+++ b/html/_c_hi_ma_d__benchmark1a_2equations_8h_source.html
@@ -0,0 +1,274 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/_c_hi_ma_d__benchmark1a_2main_8cc.html b/html/_c_hi_ma_d__benchmark1a_2main_8cc.html
new file mode 100644
index 000000000..a25ac2178
--- /dev/null
+++ b/html/_c_hi_ma_d__benchmark1a_2main_8cc.html
@@ -0,0 +1,142 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
#include "../../include/dealIIheaders.h"#include "parameters.h"#include "../../src/models/coupled/generalized_model.h"#include "equations.h"#include "ICs_and_BCs.h"#include "../../src/models/coupled/generalized_model_functions.h"+Functions | |
| int | main (int argc, char **argv) |
| int main | +( | +int | +argc, | +
| + | + | char ** | +argv | +
| + | ) | ++ |
+ 1.8.10
+
+
+
diff --git a/html/_c_hi_ma_d__benchmark1a_2parameters_8h.html b/html/_c_hi_ma_d__benchmark1a_2parameters_8h.html
new file mode 100644
index 000000000..a9f9a4342
--- /dev/null
+++ b/html/_c_hi_ma_d__benchmark1a_2parameters_8h.html
@@ -0,0 +1,362 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
Go to the source code of this file.
++Macros | |
| #define | problemDIM 2 |
| #define | spanX 200.0 |
| #define | spanY 200.0 |
| #define | spanZ 100.0 |
| #define | subdivisionsX 1 |
| #define | subdivisionsY 1 |
| #define | subdivisionsZ 1 |
| #define | refineFactor 7 |
| #define | finiteElementDegree 1 |
| #define | timeStep 5.0e-3 |
| #define | timeFinal 10000.0 |
| #define | timeIncrements 2000000 |
| #define | writeOutput true |
| #define | outputCondition "LIST" |
| #define | numOutputs 10 |
| #define | outputList {0,200,1000,2000,4000,20000,40000,100000,200000,400000,600000,2000000} |
| #define | skipPrintSteps 10 |
| #define | calcEnergy true |
| #define calcEnergy true | +
| #define finiteElementDegree 1 | +
| #define numOutputs 10 | +
| #define outputCondition "LIST" | +
| #define outputList {0,200,1000,2000,4000,20000,40000,100000,200000,400000,600000,2000000} | +
| #define problemDIM 2 | +
| #define refineFactor 7 | +
| #define skipPrintSteps 10 | +
| #define spanX 200.0 | +
| #define spanY 200.0 | +
| #define spanZ 100.0 | +
| #define subdivisionsX 1 | +
| #define subdivisionsY 1 | +
| #define subdivisionsZ 1 | +
| #define timeFinal 10000.0 | +
| #define timeIncrements 2000000 | +
| #define timeStep 5.0e-3 | +
| #define writeOutput true | +
+ 1.8.10
+
+
+
diff --git a/html/_c_hi_ma_d__benchmark1a_2parameters_8h_source.html b/html/_c_hi_ma_d__benchmark1a_2parameters_8h_source.html
new file mode 100644
index 000000000..ad680ebab
--- /dev/null
+++ b/html/_c_hi_ma_d__benchmark1a_2parameters_8h_source.html
@@ -0,0 +1,167 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/_c_hi_ma_d__benchmark2a_2_i_cs__and___b_cs_8h.html b/html/_c_hi_ma_d__benchmark2a_2_i_cs__and___b_cs_8h.html
new file mode 100644
index 000000000..7d412049a
--- /dev/null
+++ b/html/_c_hi_ma_d__benchmark2a_2_i_cs__and___b_cs_8h.html
@@ -0,0 +1,113 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
Go to the source code of this file.
++Classes | |
| class | InitialCondition< dim > |
| class | InitialConditionVec< dim > |
+ 1.8.10
+
+
+
diff --git a/html/_c_hi_ma_d__benchmark2a_2_i_cs__and___b_cs_8h_source.html b/html/_c_hi_ma_d__benchmark2a_2_i_cs__and___b_cs_8h_source.html
new file mode 100644
index 000000000..e149d7840
--- /dev/null
+++ b/html/_c_hi_ma_d__benchmark2a_2_i_cs__and___b_cs_8h_source.html
@@ -0,0 +1,239 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/_c_hi_ma_d__benchmark2a_2equations_8h.html b/html/_c_hi_ma_d__benchmark2a_2equations_8h.html
new file mode 100644
index 000000000..1be1c0cf1
--- /dev/null
+++ b/html/_c_hi_ma_d__benchmark2a_2equations_8h.html
@@ -0,0 +1,740 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
Go to the source code of this file.
++Macros | |
| #define | num_var 6 |
| #define | variable_name {"c", "mu", "n1", "n2", "n3", "n4"} |
| #define | variable_type {"SCALAR","SCALAR","SCALAR","SCALAR","SCALAR","SCALAR"} |
| #define | variable_eq_type {"PARABOLIC","PARABOLIC","PARABOLIC","PARABOLIC","PARABOLIC","PARABOLIC"} |
| #define | need_val {true, false, true, true, true, true} |
| #define | need_grad {true, true, true, true, true, true} |
| #define | need_hess {false, false, false, false, false, false} |
| #define | need_val_residual {true, true, true, true, true, true} |
| #define | need_grad_residual {true, true, true, true, true, true} |
| #define | McV constV(5.0) |
| #define | MnV constV(5.0) |
| #define | KnV constV(3.0) |
| #define | KcV constV(3.0) |
| #define | wV constV(1.0) |
| #define | alpha constV(5.0) |
| #define | faV (constV(2.0)*(c-constV(0.3))*(c-constV(0.3))) |
| #define | facV (constV(4.0)*(c-constV(0.3))) |
| #define | faccV (constV(4.0)) |
| #define | fbV (constV(2.0)*(c-constV(0.7))*(c-constV(0.7))) |
| #define | fbcV (constV(4.0)*(c-constV(0.7))) |
| #define | fbccV (constV(4.0)) |
| #define | hV ( n1*n1*n1*(constV(6.0)*n1*n1-constV(15.0)*n1+constV(10.0)) + n2*n2*n2*(constV(6.0)*n2*n2-constV(15.0)*n2+constV(10.0)) + n3*n3*n3*(constV(6.0)*n3*n3-constV(15.0)*n3+constV(10.0)) + n4*n4*n4*(constV(6.0)*n4*n4-constV(15.0)*n4+constV(10.0)) ) |
| #define | hn1V ( n1*n1*(constV(30.0)*n1*n1-constV(60.0)*n1+constV(30.0)) ) |
| #define | hn2V ( n2*n2*(constV(30.0)*n2*n2-constV(60.0)*n2+constV(30.0)) ) |
| #define | hn3V ( n3*n3*(constV(30.0)*n3*n3-constV(60.0)*n3+constV(30.0)) ) |
| #define | hn4V ( n4*n4*(constV(30.0)*n4*n4-constV(60.0)*n4+constV(30.0)) ) |
| #define | gdwV ( n1*n1*(constV(1.0)-n1)*(constV(1.0)-n1) + n2*n2*(constV(1.0)-n2)*(constV(1.0)-n2) +n3*n3*(constV(1.0)-n3)*(constV(1.0)-n3) + n4*n4*(constV(1.0)-n4)*(constV(1.0)-n4) ) |
| #define | gintV ( alpha*(n1*n1*n2*n2 + n1*n1*n3*n3+ n1*n1*n4*n4 + n2*n2*n3*n3 + n2*n2*n4*n4 + n3*n3*n4*n4) ) |
| #define | gV ( gdwV + gintV ) |
| #define | dgn1V ( constV(2.0)*n1*(constV(1.0)-n1)*(constV(1.0)-constV(2.0)*n1) + constV(2.0)*alpha*n1*(n2*n2+n3*n3+n4*n4) ) |
| #define | dgn2V ( constV(2.0)*n2*(constV(1.0)-n2)*(constV(1.0)-constV(2.0)*n2) + constV(2.0)*alpha*n2*(n1*n1+n3*n3+n4*n4) ) |
| #define | dgn3V ( constV(2.0)*n3*(constV(1.0)-n3)*(constV(1.0)-constV(2.0)*n3) + constV(2.0)*alpha*n3*(n1*n1+n2*n2+n4*n4) ) |
| #define | dgn4V ( constV(2.0)*n4*(constV(1.0)-n4)*(constV(1.0)-constV(2.0)*n4) + constV(2.0)*alpha*n4*(n1*n1+n2*n2+n3*n3) ) |
| #define | rn1V ( n1 - constV(timeStep)*MnV*((fbV-faV)*hn1V + wV*dgn1V) ) |
| #define | rn2V ( n2 - constV(timeStep)*MnV*((fbV-faV)*hn2V + wV*dgn2V) ) |
| #define | rn3V ( n3 - constV(timeStep)*MnV*((fbV-faV)*hn3V + wV*dgn3V) ) |
| #define | rn4V ( n4 - constV(timeStep)*MnV*((fbV-faV)*hn4V + wV*dgn4V) ) |
| #define | rn1xV ( constV(-timeStep)*KnV*MnV*n1x ) |
| #define | rn2xV ( constV(-timeStep)*KnV*MnV*n2x ) |
| #define | rn3xV ( constV(-timeStep)*KnV*MnV*n3x ) |
| #define | rn4xV ( constV(-timeStep)*KnV*MnV*n4x ) |
| #define | rmuV ( (constV(1.0)-hV)*facV+hV*fbcV ) |
| #define | rmuxV ( KcV*cx ) |
| #define | rcV ( c ) |
| #define | rcxV ( constV(-timeStep)*McV*mux ) |
| #define alpha constV(5.0) | +
| #define dgn1V ( constV(2.0)*n1*(constV(1.0)-n1)*(constV(1.0)-constV(2.0)*n1) + constV(2.0)*alpha*n1*(n2*n2+n3*n3+n4*n4) ) | +
| #define dgn2V ( constV(2.0)*n2*(constV(1.0)-n2)*(constV(1.0)-constV(2.0)*n2) + constV(2.0)*alpha*n2*(n1*n1+n3*n3+n4*n4) ) | +
| #define dgn3V ( constV(2.0)*n3*(constV(1.0)-n3)*(constV(1.0)-constV(2.0)*n3) + constV(2.0)*alpha*n3*(n1*n1+n2*n2+n4*n4) ) | +
| #define dgn4V ( constV(2.0)*n4*(constV(1.0)-n4)*(constV(1.0)-constV(2.0)*n4) + constV(2.0)*alpha*n4*(n1*n1+n2*n2+n3*n3) ) | +
| #define faccV (constV(4.0)) | +
| #define fbccV (constV(4.0)) | +
| #define gdwV ( n1*n1*(constV(1.0)-n1)*(constV(1.0)-n1) + n2*n2*(constV(1.0)-n2)*(constV(1.0)-n2) +n3*n3*(constV(1.0)-n3)*(constV(1.0)-n3) + n4*n4*(constV(1.0)-n4)*(constV(1.0)-n4) ) | +
| #define gintV ( alpha*(n1*n1*n2*n2 + n1*n1*n3*n3+ n1*n1*n4*n4 + n2*n2*n3*n3 + n2*n2*n4*n4 + n3*n3*n4*n4) ) | +
| #define hV ( n1*n1*n1*(constV(6.0)*n1*n1-constV(15.0)*n1+constV(10.0)) + n2*n2*n2*(constV(6.0)*n2*n2-constV(15.0)*n2+constV(10.0)) + n3*n3*n3*(constV(6.0)*n3*n3-constV(15.0)*n3+constV(10.0)) + n4*n4*n4*(constV(6.0)*n4*n4-constV(15.0)*n4+constV(10.0)) ) | +
| #define KcV constV(3.0) | +
| #define KnV constV(3.0) | +
| #define McV constV(5.0) | +
| #define MnV constV(5.0) | +
| #define need_grad {true, true, true, true, true, true} | +
| #define need_grad_residual {true, true, true, true, true, true} | +
| #define need_hess {false, false, false, false, false, false} | +
| #define need_val {true, false, true, true, true, true} | +
| #define need_val_residual {true, true, true, true, true, true} | +
| #define num_var 6 | +
| #define rcV ( c ) | +
| #define rmuxV ( KcV*cx ) | +
| #define variable_eq_type {"PARABOLIC","PARABOLIC","PARABOLIC","PARABOLIC","PARABOLIC","PARABOLIC"} | +
| #define variable_name {"c", "mu", "n1", "n2", "n3", "n4"} | +
| #define wV constV(1.0) | +
+ 1.8.10
+
+
+
diff --git a/html/_c_hi_ma_d__benchmark2a_2equations_8h_source.html b/html/_c_hi_ma_d__benchmark2a_2equations_8h_source.html
new file mode 100644
index 000000000..99332ea7a
--- /dev/null
+++ b/html/_c_hi_ma_d__benchmark2a_2equations_8h_source.html
@@ -0,0 +1,351 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/_c_hi_ma_d__benchmark2a_2main_8cc.html b/html/_c_hi_ma_d__benchmark2a_2main_8cc.html
new file mode 100644
index 000000000..501566437
--- /dev/null
+++ b/html/_c_hi_ma_d__benchmark2a_2main_8cc.html
@@ -0,0 +1,142 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
#include "../../include/dealIIheaders.h"#include "parameters.h"#include "../../src/models/coupled/generalized_model.h"#include "equations.h"#include "ICs_and_BCs.h"#include "../../src/models/coupled/generalized_model_functions.h"+Functions | |
| int | main (int argc, char **argv) |
| int main | +( | +int | +argc, | +
| + | + | char ** | +argv | +
| + | ) | ++ |
+ 1.8.10
+
+
+
diff --git a/html/_c_hi_ma_d__benchmark2a_2parameters_8h.html b/html/_c_hi_ma_d__benchmark2a_2parameters_8h.html
new file mode 100644
index 000000000..5f3b284e0
--- /dev/null
+++ b/html/_c_hi_ma_d__benchmark2a_2parameters_8h.html
@@ -0,0 +1,460 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
Go to the source code of this file.
++Macros | |
| #define | problemDIM 2 |
| #define | spanX 200.0 |
| #define | spanY 200.0 |
| #define | spanZ 200.0 |
| #define | subdivisionsX 3 |
| #define | subdivisionsY 3 |
| #define | subdivisionsZ 3 |
| #define | refineFactor 6 |
| #define | finiteElementDegree 1 |
| #define | hAdaptivity false |
| #define | maxRefinementLevel (refineFactor) |
| #define | minRefinementLevel (0) |
| #define | refineCriterionFields {0,2,3,4,5} |
| #define | refineWindowMax {0.65,0.999,0.999,0.999,0.999} |
| #define | refineWindowMin {0.35,0.001,0.001,0.001,0.001} |
| #define | skipRemeshingSteps 100 |
| #define | timeStep (1.0e-3) |
| #define | timeFinal 10000.0 |
| #define | timeIncrements 20000 |
| #define | writeOutput true |
| #define | outputCondition "LIST" |
| #define | numOutputs 10 |
| #define | outputList {0, 1000, 5000, 10000, 20000} |
| #define | skipPrintSteps 1000 |
| #define | calcEnergy true |
| #define calcEnergy true | +
| #define finiteElementDegree 1 | +
| #define hAdaptivity false | +
| #define maxRefinementLevel (refineFactor) | +
| #define minRefinementLevel (0) | +
| #define numOutputs 10 | +
| #define outputCondition "LIST" | +
| #define outputList {0, 1000, 5000, 10000, 20000} | +
| #define problemDIM 2 | +
| #define refineCriterionFields {0,2,3,4,5} | +
| #define refineFactor 6 | +
| #define refineWindowMax {0.65,0.999,0.999,0.999,0.999} | +
| #define refineWindowMin {0.35,0.001,0.001,0.001,0.001} | +
| #define skipPrintSteps 1000 | +
| #define skipRemeshingSteps 100 | +
| #define spanX 200.0 | +
| #define spanY 200.0 | +
| #define spanZ 200.0 | +
| #define subdivisionsX 3 | +
| #define subdivisionsY 3 | +
| #define subdivisionsZ 3 | +
| #define timeFinal 10000.0 | +
| #define timeIncrements 20000 | +
| #define timeStep (1.0e-3) | +
| #define writeOutput true | +
+ 1.8.10
+
+
+
diff --git a/html/_c_hi_ma_d__benchmark2a_2parameters_8h_source.html b/html/_c_hi_ma_d__benchmark2a_2parameters_8h_source.html
new file mode 100644
index 000000000..9c22b8b79
--- /dev/null
+++ b/html/_c_hi_ma_d__benchmark2a_2parameters_8h_source.html
@@ -0,0 +1,193 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/_fickian_8h_source.html b/html/_fickian_8h_source.html
index c39f00a33..ba2855878 100644
--- a/html/_fickian_8h_source.html
+++ b/html/_fickian_8h_source.html
@@ -160,8 +160,8 @@
-
-
+
+
@@ -170,14 +170,14 @@
+
#include "../../_precipitateEvolution_pfunction/PLibrary/PLibrary.hh"#include <cstring>#include <cstring>#include <stdexcept>#include "../../_precipitateEvolution_pfunction/PLibrary/pfunct_faV.hh"#include "../../_precipitateEvolution_pfunction/PLibrary/pfunct_fbV.hh"#include "../../_precipitateEvolution_pfunction/PLibrary/pfunct_McV.hh"#include "../../_precipitateEvolution_pfunction/PLibrary/pfunct_Mn1V.hh"#include "../../_precipitateEvolution_pfunction/PLibrary/pfunct_Mn2V.hh"#include "../../_precipitateEvolution_pfunction/PLibrary/pfunct_Mn3V.hh"#include "pfunct_faV.hh"#include "pfunct_fbV.hh"#include "pfunct_McV.hh"#include "pfunct_Mn1V.hh"#include "pfunct_Mn2V.hh"#include "pfunct_Mn3V.hh"#include "PLibrary.hh"Namespaces | |
| #define | fnV (4.0*n*(n-1.0)*(n-0.5)) |
| #define | rnV (n-constV(timeStep*MnV)*fnV) |
| #define | rnV (n-constV(timeStep*MnV)*fnV) |
| #define | rnxV (constV(-timeStep*KnV*MnV)*nx) |
| #define | rnxV (constV(-timeStep*KnV*MnV)*nx) |
| #define numOutputs 10 | +
| #define outputCondition "EQUAL_SPACING" | +
| #define outputList {} | +
| #define skipOutputSteps 1000 | +#define skipPrintSteps 10 |
|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
Go to the source code of this file.
++Classes | |
| class | InitialCondition< dim > |
| class | InitialConditionVec< dim > |
+Macros | |
| #define | enablePFields true |
| #define | loadICs {true} |
| #define | loadSerialFile {false} |
| #define | loadFileName {"parallel_input"} |
| #define | loadFieldName {"n"} |
| #define enablePFields true | +
| #define loadFieldName {"n"} | +
| #define loadFileName {"parallel_input"} | +
| #define loadICs {true} | +
| #define loadSerialFile {false} | +
+ 1.8.10
+
+
+
diff --git a/html/allen_cahn__pfield_2_i_cs__and___b_cs_8h_source.html b/html/allen_cahn__pfield_2_i_cs__and___b_cs_8h_source.html
new file mode 100644
index 000000000..1179b936e
--- /dev/null
+++ b/html/allen_cahn__pfield_2_i_cs__and___b_cs_8h_source.html
@@ -0,0 +1,233 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/allen_cahn__pfield_2equations_8h.html b/html/allen_cahn__pfield_2equations_8h.html
new file mode 100644
index 000000000..f8c8989d1
--- /dev/null
+++ b/html/allen_cahn__pfield_2equations_8h.html
@@ -0,0 +1,320 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
Go to the source code of this file.
++Macros | |
| #define | num_var 1 |
| #define | variable_name {"n"} |
| #define | variable_type {"SCALAR"} |
| #define | variable_eq_type {"PARABOLIC"} |
| #define | need_val {true} |
| #define | need_grad {true} |
| #define | need_hess {false} |
| #define | need_val_residual {true} |
| #define | need_grad_residual {true} |
| #define | MnV 1.0 |
| #define | KnV 4.0 |
| #define | fV (n*n*n*n - 2.0*n*n*n + n*n) |
| #define | fnV (4.0*n*(n-1.0)*(n-0.5)) |
| #define | rnV (n-constV(timeStep*MnV)*fnV) |
| #define | rnxV (constV(-timeStep*KnV*MnV)*nx) |
| #define fnV (4.0*n*(n-1.0)*(n-0.5)) | +
| #define fV (n*n*n*n - 2.0*n*n*n + n*n) | +
| #define KnV 4.0 | +
| #define MnV 1.0 | +
| #define need_grad {true} | +
| #define need_grad_residual {true} | +
| #define need_hess {false} | +
| #define need_val {true} | +
| #define need_val_residual {true} | +
| #define num_var 1 | +
| #define variable_eq_type {"PARABOLIC"} | +
| #define variable_name {"n"} | +
| #define variable_type {"SCALAR"} | +
+ 1.8.10
+
+
+
diff --git a/html/allen_cahn__pfield_2equations_8h_source.html b/html/allen_cahn__pfield_2equations_8h_source.html
new file mode 100644
index 000000000..01b2e2902
--- /dev/null
+++ b/html/allen_cahn__pfield_2equations_8h_source.html
@@ -0,0 +1,259 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/allen_cahn__pfield_2main_8cc.html b/html/allen_cahn__pfield_2main_8cc.html
new file mode 100644
index 000000000..d8cf52c77
--- /dev/null
+++ b/html/allen_cahn__pfield_2main_8cc.html
@@ -0,0 +1,143 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
#include "IntegrationTools/PField.hh"#include "../../include/dealIIheaders.h"#include "parameters.h"#include "../../src/models/coupled/generalized_model.h"#include "equations.h"#include "ICs_and_BCs.h"#include "../../src/models/coupled/generalized_model_functions.h"+Functions | |
| int | main (int argc, char **argv) |
| int main | +( | +int | +argc, | +
| + | + | char ** | +argv | +
| + | ) | ++ |
+ 1.8.10
+
+
+
diff --git a/html/allen_cahn__pfield_2parameters_8h.html b/html/allen_cahn__pfield_2parameters_8h.html
new file mode 100644
index 000000000..30014d9a4
--- /dev/null
+++ b/html/allen_cahn__pfield_2parameters_8h.html
@@ -0,0 +1,376 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
Go to the source code of this file.
++Macros | |
| #define | problemDIM 2 |
| #define | spanX 100.0 |
| #define | spanY 100.0 |
| #define | spanZ 100.0 |
| #define | subdivisionsX 1 |
| #define | subdivisionsY 1 |
| #define | subdivisionsZ 1 |
| #define | refineFactor 7 |
| #define | finiteElementDegree 1 |
| #define | timeStep 1.0e-3 |
| #define | timeFinal 20.0 |
| #define | timeIncrements 20000 |
| #define | writeOutput true |
| #define | outputFileType "vtk" |
| #define | outputCondition "EQUAL_SPACING" |
| #define | numOutputs 10 |
| #define | outputList {} |
| #define | skipPrintSteps 10 |
| #define | calcEnergy true |
| #define calcEnergy true | +
| #define finiteElementDegree 1 | +
| #define numOutputs 10 | +
| #define outputCondition "EQUAL_SPACING" | +
| #define outputFileType "vtk" | +
| #define outputList {} | +
| #define problemDIM 2 | +
| #define refineFactor 7 | +
| #define skipPrintSteps 10 | +
| #define spanX 100.0 | +
| #define spanY 100.0 | +
| #define spanZ 100.0 | +
| #define subdivisionsX 1 | +
| #define subdivisionsY 1 | +
| #define subdivisionsZ 1 | +
| #define timeFinal 20.0 | +
| #define timeIncrements 20000 | +
| #define timeStep 1.0e-3 | +
| #define writeOutput true | +
+ 1.8.10
+
+
+
diff --git a/html/allen_cahn__pfield_2parameters_8h_source.html b/html/allen_cahn__pfield_2parameters_8h_source.html
new file mode 100644
index 000000000..e0cca7b36
--- /dev/null
+++ b/html/allen_cahn__pfield_2parameters_8h_source.html
@@ -0,0 +1,177 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/annotated.html b/html/annotated.html
index 7974dc746..4a0a17a88 100644
--- a/html/annotated.html
+++ b/html/annotated.html
@@ -89,19 +89,20 @@
| CAllenCahnProblem | |
| CBCFunction | |
| CCahnHilliardProblem | |
| CCoupledCahnHilliardMechanicsProblem | |
| CCoupledCHACMechanicsProblem | |
| CCoupledCHACProblem | |
| CFickianProblem | |
| CField | |
| CgeneralizedProblem | |
| CInitialCondition | |
| CInitialConditionC | |
| CInitialConditionN | |
| ►NPFunctions | |
| CAllenCahnProblem | |
| CBCFunction | |
| CCahnHilliardProblem | |
| CCoupledCahnHilliardMechanicsProblem | |
| CCoupledCHACMechanicsProblem | |
| CCoupledCHACProblem | |
| CFickianProblem | |
| CField | |
| CgeneralizedProblem | |
| CInitialCondition | |
| CInitialConditionC | |
| CInitialConditionVec | |
| CMatrixFreePDE | |
| CMechanicsProblem | |
| #define | fcV (4.0*c*(c-1.0)*(c-0.5)) |
| #define | rmuV (fcV) |
| #define | rmuV (fcV) |
| #define | rmuxV (constV(KcV)*cx) |
| #define | rmuxV (constV(KcV)*cx) |
| #define | rcV (c) |
| #define | rcxV (constV(-McV*timeStep)*mux) |
| #define | rcxV (constV(-McV*timeStep)*mux) |
| #define numOutputs 10 | +
| #define outputCondition "EQUAL_SPACING" | +
| #define outputList {} | +
| #define skipOutputSteps 1000 | +#define skipPrintSteps 10 |
| #define maxRefinementLevel (refineFactor) | +#define maxRefinementLevel (refineFactor) |
| #define minRefinementLevel (refineFactor-1) | +#define minRefinementLevel (refineFactor-1) | +
| #define numOutputs 10 | +
| #define outputCondition "EQUAL_SPACING" | +
| #define outputList {} |
| #define skipOutputSteps 1000 | +#define skipPrintSteps 10 |
Protected Attributes inherited from MatrixFreePDE< dim >
Protected Attributes inherited from MatrixFreePDE< dim >
Protected Attributes inherited from MatrixFreePDE< dim >
Protected Attributes inherited from MatrixFreePDE< dim >
Protected Attributes inherited from MatrixFreePDE< dim >
Protected Attributes inherited from MatrixFreePDE< dim >Public Attributes |
+
|
+ +inline | +
+
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+ +inline | +
+
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+ +inline | +
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+ +inline | +
+
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+ +inline | +
+
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+ +inline | +
+
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+ +inline | +
+
|
+ +inline | +
This is the complete list of members for InitialConditionC< dim >, including all inherited members.
| InitialConditionC() | InitialConditionC< dim > | inline |
| InitialConditionC() | InitialConditionC< dim > | inline |
| value(const Point< dim > &p, const unsigned int component=0) const | InitialConditionC< dim > | inline |
| value(const Point< dim > &p, const unsigned int component=0) const | InitialConditionC< dim > | inline |
-
|
- -inline | -
-
|
- -inline | -
Public Attributes |
+
|
+ +inline | +
+
|
+ +inline | +
+
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+ +inline | +
+
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+ +inline | +
+
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+ +inline | +
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+ +inline | +
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+ +inline | +
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+ +inline | +
+
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+ +inline | +
+
|
+ +inline | +
Protected Attributes | |
| std::vector< unsigned int > | outputTimeStepList |
| parallel::distributed::Triangulation< dim > | triangulation |
| std::vector< FESystem< dim > * > | FESet |
| std::vector< const ConstraintMatrix * > | constraintsSet |
| std::vector< const ConstraintMatrix * > | constraintsHangingNodesSet |
| std::vector< const ConstraintMatrix * > | constraintsDirichletSet |
| std::vector< const ConstraintMatrix * > | constraintsOtherSet |
| std::vector< const DoFHandler< dim > * > | dofHandlersSet |
| std::vector< const IndexSet * > | locally_relevant_dofsSet |
| std::vector< ConstraintMatrix * > | constraintsSet2 |
| std::vector< ConstraintMatrix * > | constraintsHangingNodesSet2 |
| std::vector< DoFHandler< dim > * > | dofHandlersSet2 |
| std::vector< IndexSet * > | locally_relevant_dofsSet2 |
| std::vector< ConstraintMatrix * > | constraintsDirichletSet_nonconst |
| std::vector< ConstraintMatrix * > | constraintsOtherSet_nonconst |
| std::vector< DoFHandler< dim > * > | dofHandlersSet_nonconst |
| std::vector< IndexSet * > | locally_relevant_dofsSet_nonconst |
| std::vector< vectorType * > | solutionSet |
| std::vector< vectorType * > | residualSet |
+
|
+ +protectedvirtual | +
Reimplemented in generalizedProblem< dim >.
+Reimplemented in generalizedProblem< dim >, CoupledCHACMechanicsProblem< dim >, CoupledCahnHilliardMechanicsProblem< dim >, and MechanicsProblem< dim >.
+ + + +
+
|
+ +protected | +
| void reinit | +( | +unsigned int | +iter = 0 | ) | ++ |
+
|
+ +protectedvirtual | +
Reimplemented in generalizedProblem< dim >.
+ +
+
|
+ +protectedvirtual | +
Reimplemented in generalizedProblem< dim >.
+ +
+
|
+ +protectedvirtual | +
|
@@ -949,7 +1152,7 @@ |||||||||||||||||||||||||||||||||||||||||||||
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@@ -969,7 +1172,7 @@ |||||||||||||||||||||||||||||||||||||||||||||
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@@ -1089,7 +1292,7 @@ |||||
|
@@ -1362,7 +1565,7 @@
|
@@ -1420,6 +1623,26 @@
+
|
+ +protected | +
Protected Attributes inherited from MatrixFreePDE< dim >|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
This is the complete list of members for pFunction, including all inherited members.
+| fun | pFunction | private |
| grad(scalarvalueType, unsigned int) | pFunction | |
| hess(scalarvalueType, unsigned int, unsigned int) | pFunction | |
| pFunction(std::string function_name) | pFunction | |
| val(scalarvalueType) | pFunction |
+ 1.8.10
+
+
+
diff --git a/html/class_p_functions_1_1p_function.html b/html/class_p_functions_1_1p_function.html
new file mode 100644
index 000000000..6ce42b7fc
--- /dev/null
+++ b/html/class_p_functions_1_1p_function.html
@@ -0,0 +1,242 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
#include <pFunction.h>
+Public Member Functions | |
| pFunction (std::string function_name) | |
| scalarvalueType | val (scalarvalueType) |
| scalarvalueType | grad (scalarvalueType, unsigned int) |
| scalarvalueType | hess (scalarvalueType, unsigned int, unsigned int) |
+Private Attributes | |
| PRISMS::PFunction< double *, double > | fun |
| pFunction | +( | +std::string | +function_name | ) | ++ |
| scalarvalueType grad | +( | +scalarvalueType | +var, | +
| + | + | unsigned int | +dir | +
| + | ) | ++ |
| scalarvalueType hess | +( | +scalarvalueType | +var, | +
| + | + | unsigned int | +dir1, | +
| + | + | unsigned int | +dir2 | +
| + | ) | ++ |
| scalarvalueType val | +( | +scalarvalueType | +var | ) | ++ |
+
|
+ +private | +
+ 1.8.10
+
+
+
diff --git a/html/classes.html b/html/classes.html
index 221f37b68..c390f5eb7 100644
--- a/html/classes.html
+++ b/html/classes.html
@@ -88,31 +88,32 @@
Protected Attributes inherited from MatrixFreePDE< dim >| void energyDensity | ( | -const std::vector< modelVariable< dim >> & | +const std::vector< modelVariable< dim > > & | modelVarList, |
+
|
+ +privatevirtual | +
Reimplemented from MatrixFreePDE< dim >.
+| void residualLHS | ( | -const std::vector< modelVariable< dim >> & | +const std::vector< modelVariable< dim > > & | modelVarList, | |||||||||||||||||||||||||||||||||||||||||
| void residualRHS | ( | -const std::vector< modelVariable< dim >> & | +const std::vector< modelVariable< dim > > & | modelVarList, |
| - | std::vector< modelResidual< dim >> & | +std::vector< modelResidual< dim > > & | modelResidualsList, | |
+
|
+ +privatevirtual | +
Reimplemented from MatrixFreePDE< dim >.
+ +
+
|
+ +privatevirtual | +
Reimplemented from MatrixFreePDE< dim >.
+| BC_values | vectorBCFunction< dim > | private |
| vector_value(const Point< dim > &p, Vector< double > &values) const | vectorBCFunction< dim > | virtual |
| vector_value_list(const std::vector< Point< dim >> &points, std::vector< Vector< double >> &value_list) const | vectorBCFunction< dim > | virtual |
| vector_value_list(const std::vector< Point< dim > > &points, std::vector< Vector< double > > &value_list) const | vectorBCFunction< dim > | virtual |
| vectorBCFunction(const std::vector< double > BC_values) | vectorBCFunction< dim > |
Private Attributes | ||||
| void vector_value_list | ( | -const std::vector< Point< dim >> & | +const std::vector< Point< dim > > & | points, |
| - | std::vector< Vector< double >> & | +std::vector< Vector< double > > & | value_list | |
Macros | |
| #define | h1strainV h1V |
| #define | h1strainV h1V |
| #define | h2strainV h2V |
| #define | h2strainV h2V |
| #define | h3strainV h3V |
| #define | h3strainV h3V |
| #define | hn1strainV hn1V |
| #define | hn1strainV hn1V |
| #define | hn2strainV hn2V |
| #define | hn2strainV hn2V |
| #define | hn3strainV hn3V |
| #define | hn3strainV hn3V |
| #define | W 0.0 |
| #define | hnV (30.0*n*n-60.0*n*n*n+30.0*n*n*n*n) |
| #define | muxV ( cx*((1.0-hV)*faccV+hV*fbccV) + nx*((fbcV-facV)*hnV) ) |
| #define | muxV ( cx*((1.0-hV)*faccV+hV*fbccV) + nx*((fbcV-facV)*hnV) ) |
| #define | rcV (c) |
| #define | rcxV (constV(-McV*timeStep)*muxV) |
| #define | rcxV (constV(-McV*timeStep)*muxV) |
| #define | rnV (n-constV(timeStep*MnV)*(fbV-faV)*hnV) |
| #define | rnV (n-constV(timeStep*MnV)*(fbV-faV)*hnV) |
| #define | rnxV (constV(-timeStep*KnV*MnV)*nx) |
| #define | rnxV (constV(-timeStep*KnV*MnV)*nx) |
| #define muxV ( cx*((1.0-hV)*faccV+hV*fbccV) + nx*((fbcV-facV)*hnV) ) | +#define muxV ( cx*((1.0-hV)*faccV+hV*fbccV) + nx*((fbcV-facV)*hnV) ) |
| #define rnV (n-constV(timeStep*MnV)*(fbV-faV)*hnV) | +#define rnV (n-constV(timeStep*MnV)*(fbV-faV)*hnV) |
| #define numOutputs 10 | +
| #define outputCondition "EQUAL_SPACING" | +
| #define outputList {} | +
| #define skipOutputSteps 1000 | +#define skipPrintSteps 10 |
#include <deal.II/grid/tria_accessor.h>#include <deal.II/grid/tria_iterator.h>#include <deal.II/grid/grid_generator.h>#include <deal.II/grid/grid_tools.h>#include <deal.II/dofs/dof_tools.h>#include <deal.II/dofs/dof_handler.h>#include <deal.II/numerics/data_out.h>| #define hAdaptivity false | +
| #define numOutputs 1 | +
| #define outputCondition "EQUAL_SPACING" | +
| #define outputFileType "vtu" | +
| #define outputList {0} | +
| #define skipPrintSteps 1 | +
|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+Files | |
| file | equations.h [code] |
| file | ICs_and_BCs.h [code] |
| file | main.cc |
| file | parameters.h [code] |
+ 1.8.10
+
+
+
diff --git a/html/dir_1366dd5926958b394178a0b7be98ccde.html b/html/dir_1366dd5926958b394178a0b7be98ccde.html
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@@ -0,0 +1,101 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+Files | |
| file | pFunction.h [code] |
+ 1.8.10
+
+
+
diff --git a/html/dir_2cee9652ac4b97e6d6fc4d502fd380b2.html b/html/dir_2cee9652ac4b97e6d6fc4d502fd380b2.html
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@@ -0,0 +1,101 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+Files | |
| file | PLibrary.cc |
+ 1.8.10
+
+
+
diff --git a/html/dir_4846295a09916cf9ab92b4c1b2740d5f.html b/html/dir_4846295a09916cf9ab92b4c1b2740d5f.html
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@@ -0,0 +1,107 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+Files | |
| file | equations.h [code] |
| file | ICs_and_BCs.h [code] |
| file | main.cc |
| file | parameters.h [code] |
+ 1.8.10
+
+
+
diff --git a/html/dir_596cafc87c409051734ff25d3f3a8536.html b/html/dir_596cafc87c409051734ff25d3f3a8536.html
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@@ -0,0 +1,107 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+Files | |
| file | equations.h [code] |
| file | ICs_and_BCs.h [code] |
| file | main.cc |
| file | parameters.h [code] |
+ 1.8.10
+
+
+
diff --git a/html/dir_6f4c8ec7a166ba926b367e6a31522088.html b/html/dir_6f4c8ec7a166ba926b367e6a31522088.html
new file mode 100644
index 000000000..908549993
--- /dev/null
+++ b/html/dir_6f4c8ec7a166ba926b367e6a31522088.html
@@ -0,0 +1,107 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+Files | |
| file | equations.h [code] |
| file | ICs_and_BCs.h [code] |
| file | main.cc |
| file | parameters.h [code] |
+ 1.8.10
+
+
+
diff --git a/html/dir_7baae37d69621177578e4543a43f7d3c.html b/html/dir_7baae37d69621177578e4543a43f7d3c.html
index 6f5396d4e..e4333d3eb 100644
--- a/html/dir_7baae37d69621177578e4543a43f7d3c.html
+++ b/html/dir_7baae37d69621177578e4543a43f7d3c.html
@@ -93,7 +93,7 @@
|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+Directories | |
| directory | PLibrary |
+Files | |
| file | equations.h [code] |
| file | ICs_and_BCs.h [code] |
| file | main.cc |
| file | parameters.h [code] |
+ 1.8.10
+
+
+
diff --git a/html/dir_da2bc9e5bb0cc4a7e846a35a317e0152.html b/html/dir_da2bc9e5bb0cc4a7e846a35a317e0152.html
index cf22fb6f8..990e3ff47 100644
--- a/html/dir_da2bc9e5bb0cc4a7e846a35a317e0152.html
+++ b/html/dir_da2bc9e5bb0cc4a7e846a35a317e0152.html
@@ -91,6 +91,8 @@
| #define rcV (c + timeStep*subdomain(exp1 && exp2, constV(1.0)) ) | +#define rcV (c + timeStep*subdomain(exp1 && exp2, constV(1.0)) ) |
| #define numOutputs 10 | +
| #define outputCondition "EQUAL_SPACING" | +
| #define outputList {} | +
| #define skipOutputSteps 100 | +#define skipPrintSteps 10 |
|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/functions_i.html b/html/functions_i.html
index 6089abb6b..c2b7826cd 100644
--- a/html/functions_i.html
+++ b/html/functions_i.html
@@ -84,6 +84,7 @@
Variables | |
| #define enablePFields false | +
| #define loadFieldName {} | +
| #define loadFileName {} | +
| #define loadICs {} | +
| #define loadSerialFile {} | +
|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/globals.html b/html/globals.html
index 563a9b25e..0640db38d 100644
--- a/html/globals.html
+++ b/html/globals.html
@@ -100,6 +100,9 @@
|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/globals_defs_m.html b/html/globals_defs_m.html
index 0ba5e02b9..04776a416 100644
--- a/html/globals_defs_m.html
+++ b/html/globals_defs_m.html
@@ -89,6 +89,7 @@
|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/globals_defs_y.html b/html/globals_defs_y.html
new file mode 100644
index 000000000..f6e8c1913
--- /dev/null
+++ b/html/globals_defs_y.html
@@ -0,0 +1,139 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/globals_defs_z.html b/html/globals_defs_z.html
new file mode 100644
index 000000000..f4453d8c2
--- /dev/null
+++ b/html/globals_defs_z.html
@@ -0,0 +1,139 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/globals_e.html b/html/globals_e.html
index e8350a764..d2229abd0 100644
--- a/html/globals_e.html
+++ b/html/globals_e.html
@@ -100,6 +100,9 @@
|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/globals_y.html b/html/globals_y.html
new file mode 100644
index 000000000..efe051a2a
--- /dev/null
+++ b/html/globals_y.html
@@ -0,0 +1,139 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/globals_z.html b/html/globals_z.html
new file mode 100644
index 000000000..56d234b46
--- /dev/null
+++ b/html/globals_z.html
@@ -0,0 +1,139 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/grain_growth_2_i_cs__and___b_cs_8h_source.html b/html/grain_growth_2_i_cs__and___b_cs_8h_source.html
index 42c26feb1..96f57d74f 100644
--- a/html/grain_growth_2_i_cs__and___b_cs_8h_source.html
+++ b/html/grain_growth_2_i_cs__and___b_cs_8h_source.html
@@ -109,103 +109,100 @@
-
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-
-| #define hAdaptivity true | +
| #define maxRefinementLevel (refineFactor) | +
| #define minRefinementLevel (refineFactor-3) | +
| #define numOutputs 10 | +
| #define outputCondition "EQUAL_SPACING" | +
| #define outputList {} | +
| #define refineCriterionFields {0,1,2,3,4,5,6,7,8,9} | +
| #define refineWindowMax {0.999,0.999,0.999,0.999,0.999,0.999,0.999,0.999,0.999,0.999} | +
| #define refineWindowMin {0.001,0.001,0.001,0.001,0.001,0.001,0.001,0.001,0.001,0.001} | +
| #define skipPrintSteps 10 | +
| #define skipOutputSteps 1000 | +#define skipRemeshingSteps 1000 |
Code repository: https://github.com/prisms-center/phaseField
Code documentation: https://goo.gl/00y23N
- User registration link: http://goo.gl/forms/GXo7Im8p2Y
Version information:
-This version of the code, 1.0, is the first release version of PRISMS-PF. This version provides many updates to the pre-release versions. For more information concerning the differences between versions, please consult version_changes.txt.
+This version of the code, 1.1, is an update the first release version of PRISMS-PF. For:q information concerning the differences between versions, please consult version_changes.txt.
What is PRISMS-PF?
-PRISMS-PF is a high-performance Finite Element Method (FEM) code for phase field modeling simulations and solving related systems of partial differential equations. It has a flexible user interface designed to allow users to easily modify existing applications as well as developing their own. In terms of performance, PRISMS-PF has been shown to be competitive with state-of-the-art finite difference codes. PRISMS-PF has been tested on thousands of processors and has been used in simulations with over one billion degrees of freedom.
+PRISMS-PF is a powerful, massively parallel finite element code for conducting phase field and other related simulations of microstructural evolution. The phase field method is commonly used for predicting the evolution if microstructures under a wide range of conditions and material systems. PRISMS-PF provides a simple interface for solving customizable systems of partial differential equations of the type commonly found in phase field models, and has 11 pre-built application modules, including for precipitate evolution, grain growth, and spinodal decomposition.
+With PRISMS-PF, you have access to adaptive meshing and parallelization with near-ideal scaling for over a thousand processors. Moreover, the matrix-free framework from the deal.II library allows much larger than simulations than typical finite element programs – PRISMS-PF has been used for simulations with over one billion degrees of freedom. PRISMS-PF also provides performance competitive with or exceeding single-purpose codes. For example, even without enabling the mesh adaptivity features in PRISMS-PF, it has been demonstrated to be 4.5x faster than an equivalent finite difference code.
This code is developed by the PRedictive Integrated Structural Materials Science (PRISMS) Center [http://www.prisms-center.org/] at University of Michigan which is supported by the U.S. Department of Energy (DOE), Office of Basic Energy Sciences, Division of Materials Sciences and Engineering under Award DE-SC0008637
Quick Start Guide:
-For detailed instructions on how to download and use PRISMS-PF, please consult the PRISMS-PF Users Guide (the file prismspf_users_guide.pdf). An abbreviated version of the instructions is given below.
+For detailed instructions on how to download and use PRISMS-PF, please consult the PRISMS-PF Users Guide (the file prismspf_users_guide.pdf). A (very) abbreviated version of the instructions is given below.
Installation:
1) Install deal.II (version 8.4.1 recommended)
2) Clone the PRISMS-PF GitHub repo https://github.com/prisms-center/phaseField
@@ -149,13 +153,11 @@
License:
GNU Lesser General Public License (LGPL). Please see the file LICENSE for details.
-Mailing List:
+Further information, questions, issues and bugs:
Further information, questions, issues and bugs:
-Contact the developers at prismsphaseField.dev@umich.edu
#include "model_variables.h"#include "../src/matrixfree/matrixFreePDE.cc"#include "../src/matrixfree/init.cc"#include "../src/matrixfree/reinit.cc"#include "../src/matrixfree/initForTests.cc"#include "../src/matrixfree/refine.cc"#include "../src/matrixfree/invM.cc"#include "../src/matrixfree/utilities.cc"#include "../src/matrixfree/calcFreeEnergy.cc"#include "../src/matrixfree/integrate_and_shift_field.cc"#include "../src/matrixfree/getOutputTimeSteps.cc"Go to the source code of this file.
| typedef dealii::parallel::distributed::Vector< double > | vectorType |
| typedef dealii::FEEvaluation< problemDIM, finiteElementDegree, finiteElementDegree+1, 1, double > | typeScalar |
| typedef dealii::FEEvaluation< problemDIM, finiteElementDegree, finiteElementDegree+1, 1, double > | typeScalar |
| typedef dealii::FEEvaluation< problemDIM, finiteElementDegree, finiteElementDegree+1, problemDIM, double > | typeVector |
| typedef dealii::FEEvaluation< problemDIM, finiteElementDegree, finiteElementDegree+1, problemDIM, double > | typeVector |
| typedef dealii::VectorizedArray< double > | scalarvalueType |
| typedef dealii::Tensor< 1, problemDIM, dealii::VectorizedArray< double > > | vectorvalueType |
| typedef dealii::Tensor< 1, problemDIM, dealii::VectorizedArray< double > > | vectorvalueType |
| typedef dealii::Tensor< 1, problemDIM, dealii::VectorizedArray< double > > | scalargradType |
| typedef dealii::Tensor< 1, problemDIM, dealii::VectorizedArray< double > > | scalargradType |
| typedef dealii::Tensor< 2, problemDIM, dealii::VectorizedArray< double > > | scalarhessType |
| typedef dealii::Tensor< 2, problemDIM, dealii::VectorizedArray< double > > | scalarhessType |
| typedef dealii::Tensor< 2, problemDIM, dealii::VectorizedArray< double > > | vectorgradType |
| typedef dealii::Tensor< 2, problemDIM, dealii::VectorizedArray< double > > | vectorgradType |
| typedef dealii::Tensor< 3, problemDIM, dealii::VectorizedArray< double > > | vectorhessType |
| typedef dealii::Tensor< 3, problemDIM, dealii::VectorizedArray< double > > | vectorhessType |
| typedef dealii::Tensor<1, problemDIM, dealii::VectorizedArray<double> > scalargradType | +typedef dealii::Tensor<1, problemDIM, dealii::VectorizedArray<double> > scalargradType |
| typedef dealii::Tensor<2,problemDIM,dealii::VectorizedArray<double> > scalarhessType | +typedef dealii::Tensor<2,problemDIM,dealii::VectorizedArray<double> > scalarhessType |
| typedef dealii::FEEvaluation<problemDIM,finiteElementDegree,finiteElementDegree+1,1,double> typeScalar | +typedef dealii::FEEvaluation<problemDIM,finiteElementDegree,finiteElementDegree+1,1,double> typeScalar |
| typedef dealii::FEEvaluation<problemDIM,finiteElementDegree,finiteElementDegree+1,problemDIM,double> typeVector | +typedef dealii::FEEvaluation<problemDIM,finiteElementDegree,finiteElementDegree+1,problemDIM,double> typeVector |
| typedef dealii::Tensor<2, problemDIM, dealii::VectorizedArray<double> > vectorgradType | +typedef dealii::Tensor<2, problemDIM, dealii::VectorizedArray<double> > vectorgradType |
| typedef dealii::Tensor<3, problemDIM, dealii::VectorizedArray<double> > vectorhessType | +typedef dealii::Tensor<3, problemDIM, dealii::VectorizedArray<double> > vectorhessType |
| typedef dealii::Tensor<1, problemDIM, dealii::VectorizedArray<double> > vectorvalueType | +typedef dealii::Tensor<1, problemDIM, dealii::VectorizedArray<double> > vectorvalueType |
|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+Classes | |
| class | pFunction |
+ 1.8.10
+
+
+
diff --git a/html/p_function_8h.html b/html/p_function_8h.html
new file mode 100644
index 000000000..6b06639cd
--- /dev/null
+++ b/html/p_function_8h.html
@@ -0,0 +1,117 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
Go to the source code of this file.
++Classes | |
| class | pFunction |
+Namespaces | |
| PFunctions | |
+ 1.8.10
+
+
+
diff --git a/html/p_function_8h_source.html b/html/p_function_8h_source.html
new file mode 100644
index 000000000..2a5f86508
--- /dev/null
+++ b/html/p_function_8h_source.html
@@ -0,0 +1,173 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/precipitate_evolution_2_i_cs__and___b_cs_8h_source.html b/html/precipitate_evolution_2_i_cs__and___b_cs_8h_source.html
index 18e17057b..e36397070 100644
--- a/html/precipitate_evolution_2_i_cs__and___b_cs_8h_source.html
+++ b/html/precipitate_evolution_2_i_cs__and___b_cs_8h_source.html
@@ -193,7 +193,7 @@
-
+
@@ -217,7 +217,7 @@
-
+
@@ -354,7 +354,7 @@ Macro Definition Documentation
@@ -594,7 +594,7 @@ Macro Definition Documentation
@@ -606,7 +606,7 @@ Macro Definition Documentation
@@ -618,7 +618,7 @@ Macro Definition Documentation
@@ -630,7 +630,7 @@ Macro Definition Documentation
@@ -642,7 +642,7 @@ Macro Definition Documentation
@@ -654,7 +654,7 @@ Macro Definition Documentation
@@ -666,7 +666,7 @@
Macro Definition Documentation
diff --git a/html/precipitate_evolution_2equations_8h_source.html b/html/precipitate_evolution_2equations_8h_source.html
index a74e83754..1d5645d26 100644
--- a/html/precipitate_evolution_2equations_8h_source.html
+++ b/html/precipitate_evolution_2equations_8h_source.html
@@ -152,7 +152,7 @@
-
+
66 // Linear fits for the stress-free transformation strains in for sfts = sfts_linear * c + sfts_const
@@ -202,8 +202,8 @@
- 113 void generalizedProblem<dim>::residualRHS(const std::vector<modelVariable<dim>> & modelVariablesList,
-
+ 113 void generalizedProblem<dim>::residualRHS(const std::vector<modelVariable<dim> > & modelVariablesList,
+
@@ -360,7 +360,7 @@
- 271 grad_mu_el[k]+= - S2[i][j] * (sfts1c[i][j]*hn1V*n1x[k] + sfts2c[i][j]*hn2V*n2x[k] + sfts3c[i][j]*hn3V*n3x[k]);
+
@@ -414,7 +414,7 @@
- 325 void generalizedProblem<dim>::residualLHS(const std::vector<modelVariable<dim>> & modelVariablesList,
+ 325 void generalizedProblem<dim>::residualLHS(const std::vector<modelVariable<dim> > & modelVariablesList,
@@ -463,7 +463,7 @@
- 374 void generalizedProblem<dim>::energyDensity(const std::vector<modelVariable<dim>> & modelVarList,
+ 374 void generalizedProblem<dim>::energyDensity(const std::vector<modelVariable<dim> > & modelVarList,
@@ -593,13 +593,12 @@
-void energyDensity(const std::vector< modelVariable< dim >> &modelVarList, const dealii::VectorizedArray< double > &JxW_value, dealii::Point< dim, dealii::VectorizedArray< double > > q_point_loc) Definition: equations.h:106 Definition: model_variables.h:25 void residualRHS(const std::vector< modelVariable< dim > > &modelVarList, std::vector< modelResidual< dim > > &modelResidualsList, dealii::Point< dim, dealii::VectorizedArray< double > > q_point_loc) const Definition: equations.h:58 dealii::Tensor< 1, problemDIM, dealii::VectorizedArray< double > > scalargradType Definition: matrixFreePDE.h:51 void residualLHS(const std::vector< modelVariable< dim >> &modelVarList, modelResidual< dim > &modelRes, dealii::Point< dim, dealii::VectorizedArray< double > > q_point_loc) const Definition: equations.h:89 void residualLHS(const std::vector< modelVariable< dim > > &modelVarList, modelResidual< dim > &modelRes, dealii::Point< dim, dealii::VectorizedArray< double > > q_point_loc) const Definition: equations.h:89 void residualRHS(const std::vector< modelVariable< dim >> &modelVarList, std::vector< modelResidual< dim >> &modelResidualsList, dealii::Point< dim, dealii::VectorizedArray< double > > q_point_loc) const Definition: equations.h:58 void energyDensity(const std::vector< modelVariable< dim > > &modelVarList, const dealii::VectorizedArray< double > &JxW_value, dealii::Point< dim, dealii::VectorizedArray< double > > q_point_loc) Definition: equations.h:106 diff --git a/html/precipitate_evolution_2parameters_8h.html b/html/precipitate_evolution_2parameters_8h.html index c67a757b0..deff64d8e 100644 --- a/html/precipitate_evolution_2parameters_8h.html +++ b/html/precipitate_evolution_2parameters_8h.html @@ -117,9 +117,9 @@ | #define | hAdaptivity true | | #define | maxRefinementLevel (refineFactor) | #define | maxRefinementLevel (refineFactor) | | #define | minRefinementLevel (refineFactor-2) | #define | minRefinementLevel (refineFactor-2) | | #define | refineCriterionFields {1,2,3} | | | #define | timeFinal 100.0 | | #define | timeIncrements 5000 | #define | timeIncrements 10 | | #define | solverType SolverCG | | | #define | writeOutput true | | #define | skipOutputSteps 500 | | #define | outputCondition "EQUAL_SPACING" | | #define | numOutputs 10 | | #define | outputList {} | | #define | skipPrintSteps 10 | | #define | calcEnergy true | | | ||||||||||||||||||||||||||||
| #define MaterialConstants {{2.0,0.3},{2.5,0.3}} | +#define MaterialConstants {{40.0,0.3},{50.0,0.3}} |
| #define maxRefinementLevel (refineFactor) | +#define maxRefinementLevel (refineFactor) |
| #define minRefinementLevel (refineFactor-2) | +#define minRefinementLevel (refineFactor-2) | +
| #define numOutputs 10 | +
| #define outputCondition "EQUAL_SPACING" | +
| #define outputList {} |
| #define skipOutputSteps 500 | +#define skipPrintSteps 10 |
| #define timeIncrements 5000 | +#define timeIncrements 10 |
|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
Go to the source code of this file.
++Classes | |
| class | InitialCondition< dim > |
| class | InitialConditionVec< dim > |
+ 1.8.10
+
+
+
diff --git a/html/precipitate_evolution__pfunction_2_i_cs__and___b_cs_8h_source.html b/html/precipitate_evolution__pfunction_2_i_cs__and___b_cs_8h_source.html
new file mode 100644
index 000000000..0e4c0a727
--- /dev/null
+++ b/html/precipitate_evolution__pfunction_2_i_cs__and___b_cs_8h_source.html
@@ -0,0 +1,243 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/precipitate_evolution__pfunction_2equations_8h.html b/html/precipitate_evolution__pfunction_2equations_8h.html
new file mode 100644
index 000000000..749f4aa73
--- /dev/null
+++ b/html/precipitate_evolution__pfunction_2equations_8h.html
@@ -0,0 +1,942 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
Go to the source code of this file.
++Macros | |
| #define | num_var 5 |
| #define | variable_name {"c", "n1", "n2", "n3", "u"} |
| #define | variable_type {"SCALAR","SCALAR","SCALAR","SCALAR","VECTOR"} |
| #define | variable_eq_type {"PARABOLIC","PARABOLIC","PARABOLIC","PARABOLIC","ELLIPTIC"} |
| #define | need_val {true, true, true, true, false} |
| #define | need_grad {true, true, true, true, true} |
| #define | need_hess {false, false, false, false, false} |
| #define | need_val_residual {true, true, true, true, false} |
| #define | need_grad_residual {true, true, true, true, true} |
| #define | need_val_LHS {false, true, true, true, false} |
| #define | need_grad_LHS {false, false, false, false, true} |
| #define | need_hess_LHS {false, false, false, false, false} |
| #define | need_val_residual_LHS {false, false, false, false, false} |
| #define | need_grad_residual_LHS {false, false, false, false, true} |
| #define | McV pfunct_McV.val(c) |
| #define | Mn1V pfunct_Mn1V.val(c) |
| #define | Mn2V pfunct_Mn2V.val(c) |
| #define | Mn3V pfunct_Mn3V.val(c) |
| #define | n_dependent_stiffness true |
| #define | MaterialModels {{"ISOTROPIC"},{"ISOTROPIC"}} |
| #define | MaterialConstants {{40.0,0.3},{50.0,0.3}} |
| #define | faV pfunct_faV.val(c) |
| #define | facV pfunct_faV.grad(c,0) |
| #define | faccV pfunct_faV.hess(c,0,0) |
| #define | fbV pfunct_fbV.val(c) |
| #define | fbcV pfunct_fbV.grad(c,0) |
| #define | fbccV pfunct_fbV.hess(c,0,0) |
| #define | h1V (10.0*n1*n1*n1-15.0*n1*n1*n1*n1+6.0*n1*n1*n1*n1*n1) |
| #define | h2V (10.0*n2*n2*n2-15.0*n2*n2*n2*n2+6.0*n2*n2*n2*n2*n2) |
| #define | h3V (10.0*n3*n3*n3-15.0*n3*n3*n3*n3+6.0*n3*n3*n3*n3*n3) |
| #define | hn1V (30.0*n1*n1-60.0*n1*n1*n1+30.0*n1*n1*n1*n1) |
| #define | hn2V (30.0*n2*n2-60.0*n2*n2*n2+30.0*n2*n2*n2*n2) |
| #define | hn3V (30.0*n3*n3-60.0*n3*n3*n3+30.0*n3*n3*n3*n3) |
| #define | rcV (c) |
| #define | rcxTemp ( cx*((1.0-h1V-h2V-h3V)*faccV+(h1V+h2V+h3V)*fbccV) + n1x*((fbcV-facV)*hn1V) + n2x*((fbcV-facV)*hn2V) + n3x*((fbcV-facV)*hn3V) + grad_mu_el) |
| #define | rcxV (constV(-timeStep)*McV*rcxTemp) |
| #define | rn1V (n1-constV(timeStep)*Mn1V*((fbV-faV)*hn1V+nDependentMisfitAC1+heterMechAC1)) |
| #define | rn2V (n2-constV(timeStep)*Mn2V*((fbV-faV)*hn2V+nDependentMisfitAC2+heterMechAC2)) |
| #define | rn3V (n3-constV(timeStep)*Mn3V*((fbV-faV)*hn3V+nDependentMisfitAC3+heterMechAC3)) |
| #define | rn1xV (constV(-timeStep)*Mn1V*Knx1) |
| #define | rn2xV (constV(-timeStep)*Mn2V*Knx2) |
| #define | rn3xV (constV(-timeStep)*Mn3V*Knx3) |
+Functions | |
| PFunctions::pFunction | pfunct_McV ("pfunct_McV") |
| PFunctions::pFunction | pfunct_Mn1V ("pfunct_Mn1V") |
| PFunctions::pFunction | pfunct_Mn2V ("pfunct_Mn1V") |
| PFunctions::pFunction | pfunct_Mn3V ("pfunct_Mn1V") |
| PFunctions::pFunction | pfunct_faV ("pfunct_faV") |
| PFunctions::pFunction | pfunct_fbV ("pfunct_fbV") |
+Variables | |
| double | Kn1 [3][3] ={{0.03,0,0},{0,0.007,0},{0,0,1.0}} |
| double | Kn2 [3][3] ={{0.01275,-0.009959,0},{-0.009959,0.02425,0},{0,0,1.0}} |
| double | Kn3 [3][3] ={{0.01275,0.009959,0},{0.009959,0.02425,0},{0,0,1.0}} |
| double | sfts_linear1 [3][3] = {{0,0,0},{0,0,0},{0,0,0}} |
| double | sfts_const1 [3][3] = {{0.0345,0,0},{0,0.0185,0},{0,0,-0.00270}} |
| double | sfts_linear2 [3][3] = {{0,0,0},{0,0,0},{0,0,0}} |
| double | sfts_const2 [3][3] ={{0.0225,-0.0069,0},{-0.0069,0.0305,0},{0,0,-0.00270}} |
| double | sfts_linear3 [3][3] = {{0,0,0},{0,0,0},{0,0,0}} |
| double | sfts_const3 [3][3] ={{0.0225, 0.0069,0},{0.0069,0.0305,0},{0,0,-0.00270}} |
| #define faccV pfunct_faV.hess(c,0,0) | +
| #define facV pfunct_faV.grad(c,0) | +
| #define faV pfunct_faV.val(c) | +
| #define fbccV pfunct_fbV.hess(c,0,0) | +
| #define fbcV pfunct_fbV.grad(c,0) | +
| #define fbV pfunct_fbV.val(c) | +
| #define h1V (10.0*n1*n1*n1-15.0*n1*n1*n1*n1+6.0*n1*n1*n1*n1*n1) | +
| #define h2V (10.0*n2*n2*n2-15.0*n2*n2*n2*n2+6.0*n2*n2*n2*n2*n2) | +
| #define h3V (10.0*n3*n3*n3-15.0*n3*n3*n3*n3+6.0*n3*n3*n3*n3*n3) | +
| #define hn1V (30.0*n1*n1-60.0*n1*n1*n1+30.0*n1*n1*n1*n1) | +
| #define hn2V (30.0*n2*n2-60.0*n2*n2*n2+30.0*n2*n2*n2*n2) | +
| #define hn3V (30.0*n3*n3-60.0*n3*n3*n3+30.0*n3*n3*n3*n3) | +
| #define MaterialConstants {{40.0,0.3},{50.0,0.3}} | +
| #define MaterialModels {{"ISOTROPIC"},{"ISOTROPIC"}} | +
| #define McV pfunct_McV.val(c) | +
| #define Mn1V pfunct_Mn1V.val(c) | +
| #define Mn2V pfunct_Mn2V.val(c) | +
| #define Mn3V pfunct_Mn3V.val(c) | +
| #define n_dependent_stiffness true | +
| #define need_grad {true, true, true, true, true} | +
| #define need_grad_LHS {false, false, false, false, true} | +
| #define need_grad_residual {true, true, true, true, true} | +
| #define need_grad_residual_LHS {false, false, false, false, true} | +
| #define need_hess {false, false, false, false, false} | +
| #define need_hess_LHS {false, false, false, false, false} | +
| #define need_val {true, true, true, true, false} | +
| #define need_val_LHS {false, true, true, true, false} | +
| #define need_val_residual {true, true, true, true, false} | +
| #define need_val_residual_LHS {false, false, false, false, false} | +
| #define num_var 5 | +
| #define rcV (c) | +
| #define rcxTemp ( cx*((1.0-h1V-h2V-h3V)*faccV+(h1V+h2V+h3V)*fbccV) + n1x*((fbcV-facV)*hn1V) + n2x*((fbcV-facV)*hn2V) + n3x*((fbcV-facV)*hn3V) + grad_mu_el) | +
| #define rn1V (n1-constV(timeStep)*Mn1V*((fbV-faV)*hn1V+nDependentMisfitAC1+heterMechAC1)) | +
| #define rn2V (n2-constV(timeStep)*Mn2V*((fbV-faV)*hn2V+nDependentMisfitAC2+heterMechAC2)) | +
| #define rn3V (n3-constV(timeStep)*Mn3V*((fbV-faV)*hn3V+nDependentMisfitAC3+heterMechAC3)) | +
| #define variable_name {"c", "n1", "n2", "n3", "u"} | +
| PFunctions::pFunction pfunct_faV | +( | +"pfunct_faV" | +) | ++ |
| PFunctions::pFunction pfunct_fbV | +( | +"pfunct_fbV" | +) | ++ |
| PFunctions::pFunction pfunct_McV | +( | +"pfunct_McV" | +) | ++ |
| PFunctions::pFunction pfunct_Mn1V | +( | +"pfunct_Mn1V" | +) | ++ |
| PFunctions::pFunction pfunct_Mn2V | +( | +"pfunct_Mn1V" | +) | ++ |
| PFunctions::pFunction pfunct_Mn3V | +( | +"pfunct_Mn1V" | +) | ++ |
| double Kn1[3][3] ={{0.03,0,0},{0,0.007,0},{0,0,1.0}} | +
| double Kn2[3][3] ={{0.01275,-0.009959,0},{-0.009959,0.02425,0},{0,0,1.0}} | +
| double Kn3[3][3] ={{0.01275,0.009959,0},{0.009959,0.02425,0},{0,0,1.0}} | +
| double sfts_const1[3][3] = {{0.0345,0,0},{0,0.0185,0},{0,0,-0.00270}} | +
| double sfts_const2[3][3] ={{0.0225,-0.0069,0},{-0.0069,0.0305,0},{0,0,-0.00270}} | +
| double sfts_const3[3][3] ={{0.0225, 0.0069,0},{0.0069,0.0305,0},{0,0,-0.00270}} | +
| double sfts_linear1[3][3] = {{0,0,0},{0,0,0},{0,0,0}} | +
| double sfts_linear2[3][3] = {{0,0,0},{0,0,0},{0,0,0}} | +
| double sfts_linear3[3][3] = {{0,0,0},{0,0,0},{0,0,0}} | +
+ 1.8.10
+
+
+
diff --git a/html/precipitate_evolution__pfunction_2equations_8h_source.html b/html/precipitate_evolution__pfunction_2equations_8h_source.html
new file mode 100644
index 000000000..5d752e499
--- /dev/null
+++ b/html/precipitate_evolution__pfunction_2equations_8h_source.html
@@ -0,0 +1,654 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/precipitate_evolution__pfunction_2main_8cc.html b/html/precipitate_evolution__pfunction_2main_8cc.html
new file mode 100644
index 000000000..97cdb5005
--- /dev/null
+++ b/html/precipitate_evolution__pfunction_2main_8cc.html
@@ -0,0 +1,145 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
#include "../../include/dealIIheaders.h"#include "parameters.h"#include "../../src/models/coupled/generalized_model.h"#include "PLibrary/PLibrary.cc"#include "PLibrary/PLibrary.hh"#include "../../src/pFunction/pFunction.h"#include "equations.h"#include "ICs_and_BCs.h"#include "../../src/models/coupled/generalized_model_functions.h"+Functions | |
| int | main (int argc, char **argv) |
| int main | +( | +int | +argc, | +
| + | + | char ** | +argv | +
| + | ) | ++ |
+ 1.8.10
+
+
+
diff --git a/html/precipitate_evolution__pfunction_2parameters_8h.html b/html/precipitate_evolution__pfunction_2parameters_8h.html
new file mode 100644
index 000000000..51b5bb4aa
--- /dev/null
+++ b/html/precipitate_evolution__pfunction_2parameters_8h.html
@@ -0,0 +1,516 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
Go to the source code of this file.
++Macros | |
| #define | problemDIM 2 |
| #define | spanX 40.0 |
| #define | spanY 40.0 |
| #define | spanZ 40.0 |
| #define | subdivisionsX 3 |
| #define | subdivisionsY 3 |
| #define | subdivisionsZ 3 |
| #define | refineFactor 5 |
| #define | finiteElementDegree 2 |
| #define | hAdaptivity true |
| #define | maxRefinementLevel (refineFactor) |
| #define | minRefinementLevel (refineFactor-2) |
| #define | refineCriterionFields {1,2,3} |
| #define | refineWindowMax {0.99,0.99,0.99} |
| #define | refineWindowMin {0.01,0.01,0.01} |
| #define | skipRemeshingSteps 1000 |
| #define | timeStep 4.0e-4 |
| #define | timeFinal 100.0 |
| #define | timeIncrements 5000 |
| #define | solverType SolverCG |
| #define | absTol true |
| #define | solverTolerance 1.0e-4 |
| #define | maxSolverIterations 1000 |
| #define | writeOutput true |
| #define | outputCondition "EQUAL_SPACING" |
| #define | numOutputs 10 |
| #define | outputList {} |
| #define | skipPrintSteps 10 |
| #define | calcEnergy false |
| #define absTol true | +
| #define calcEnergy false | +
| #define finiteElementDegree 2 | +
| #define hAdaptivity true | +
| #define maxRefinementLevel (refineFactor) | +
| #define maxSolverIterations 1000 | +
| #define minRefinementLevel (refineFactor-2) | +
| #define numOutputs 10 | +
| #define outputCondition "EQUAL_SPACING" | +
| #define outputList {} | +
| #define problemDIM 2 | +
| #define refineCriterionFields {1,2,3} | +
| #define refineFactor 5 | +
| #define refineWindowMax {0.99,0.99,0.99} | +
| #define refineWindowMin {0.01,0.01,0.01} | +
| #define skipPrintSteps 10 | +
| #define skipRemeshingSteps 1000 | +
| #define solverTolerance 1.0e-4 | +
| #define solverType SolverCG | +
| #define spanX 40.0 | +
| #define spanY 40.0 | +
| #define spanZ 40.0 | +
| #define subdivisionsX 3 | +
| #define subdivisionsY 3 | +
| #define subdivisionsZ 3 | +
| #define timeFinal 100.0 | +
| #define timeIncrements 5000 | +
| #define timeStep 4.0e-4 | +
| #define writeOutput true | +
+ 1.8.10
+
+
+
diff --git a/html/precipitate_evolution__pfunction_2parameters_8h_source.html b/html/precipitate_evolution__pfunction_2parameters_8h_source.html
new file mode 100644
index 000000000..0ff382c32
--- /dev/null
+++ b/html/precipitate_evolution__pfunction_2parameters_8h_source.html
@@ -0,0 +1,209 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/reinit_8cc.html b/html/reinit_8cc.html
new file mode 100644
index 000000000..090337b5d
--- /dev/null
+++ b/html/reinit_8cc.html
@@ -0,0 +1,122 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+Macros | |
| #define | REINIT_MATRIXFREE_H |
| #define REINIT_MATRIXFREE_H | +
+ 1.8.10
+
+
+
diff --git a/html/residuals_8h.html b/html/residuals_8h.html
new file mode 100644
index 000000000..a2d598add
--- /dev/null
+++ b/html/residuals_8h.html
@@ -0,0 +1,208 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
Go to the source code of this file.
++Macros | |
| #define | McV 1.0 |
| #define | KcV 4.0 |
| #define | fcV (4.0*c*(c-1.0)*(c-0.5)) |
| #define | rmuV (fcV) |
| #define | rmuxV (constV(KcV)*cx) |
| #define | rcV (c) |
| #define | rcxV (constV(-McV*timeStep)*mux) |
| #define fcV (4.0*c*(c-1.0)*(c-0.5)) | +
| #define KcV 4.0 | +
| #define McV 1.0 | +
| #define rcV (c) | +
| #define rmuV (fcV) | +
+ 1.8.10
+
+
+
diff --git a/html/residuals_8h_source.html b/html/residuals_8h_source.html
new file mode 100644
index 000000000..1a797c4b9
--- /dev/null
+++ b/html/residuals_8h_source.html
@@ -0,0 +1,113 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/search/all_0.js b/html/search/all_0.js
index a23aa6593..a6257aba9 100644
--- a/html/search/all_0.js
+++ b/html/search/all_0.js
@@ -1,13 +1,14 @@
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['allencahnproblem',['AllenCahnProblem',['../class_allen_cahn_problem.html',1,'AllenCahnProblem< dim >'],['../class_allen_cahn_problem.html#ae22fbde9fdd49c875fd8e30c1158ebbc',1,'AllenCahnProblem::AllenCahnProblem()']]],
- ['alpha',['alpha',['../grain_growth_2equations_8h.html#aa816ab3cd347f9fb8805f6296052c9c3',1,'equations.h']]],
+ ['alpha',['alpha',['../_c_hi_ma_d__benchmark2a_2equations_8h.html#aa816ab3cd347f9fb8805f6296052c9c3',1,'alpha(): equations.h'],['../grain_growth_2equations_8h.html#aa816ab3cd347f9fb8805f6296052c9c3',1,'alpha(): equations.h']]],
['anisotropic',['ANISOTROPIC',['../anisotropy_8h.html#abb3de18236e38998c9ebe938a8791ab3a089b8e5473289e97a7194eeee4c67d96',1,'anisotropy.h']]],
['anisotropic2d',['ANISOTROPIC2D',['../anisotropy_8h.html#abb3de18236e38998c9ebe938a8791ab3a0e3dabaec38f25fa3b2d6e832c361335',1,'anisotropy.h']]],
['anisotropy_2eh',['anisotropy.h',['../anisotropy_8h.html',1,'']]],
diff --git a/html/search/all_1.js b/html/search/all_1.js
index 72bf33776..b400ecce9 100644
--- a/html/search/all_1.js
+++ b/html/search/all_1.js
@@ -1,12 +1,11 @@
var searchData=
[
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['bc_5flist',['BC_list',['../classgeneralized_problem.html#a696a1f455c8f0351da62103276b66e17',1,'generalizedProblem']]],
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['boundaryconditions_2ecc',['boundaryConditions.cc',['../boundary_conditions_8cc.html',1,'']]],
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diff --git a/html/search/all_10.js b/html/search/all_10.js
index c9f5f2e1f..3e9dec490 100644
--- a/html/search/all_10.js
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index 000000000..b4419d84d
--- /dev/null
+++ b/html/single_precipitate_k_k_s_2equations_8h.html
@@ -0,0 +1,731 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
Go to the source code of this file.
++Macros | |
| #define | num_var 3 |
| #define | variable_name {"c", "n1", "u"} |
| #define | variable_type {"SCALAR","SCALAR","VECTOR"} |
| #define | variable_eq_type {"PARABOLIC","PARABOLIC","ELLIPTIC"} |
| #define | need_val {true, true, false} |
| #define | need_grad {true, true, true} |
| #define | need_hess {false, false, true} |
| #define | need_val_residual {true, true, false} |
| #define | need_grad_residual {true, true, true} |
| #define | need_val_LHS {false, true, false} |
| #define | need_grad_LHS {false, false, true} |
| #define | need_hess_LHS {false, false, false, false} |
| #define | need_val_residual_LHS {false, false, false} |
| #define | need_grad_residual_LHS {false, false, true} |
| #define | McV 1.0 |
| #define | Mn1V (300.0/scaleFactor) |
| #define | W (0.8/scaleFactor) |
| #define | n_dependent_stiffness true |
| #define | c_alpha ((B2*c+0.5*(B1-A1)*h1V)/(A2*h1V+B2*(1.0-h1V))) |
| #define | c_beta ((A2*c+0.5*(A1-B1)*(1.0-h1V))/(A2*h1V+B2*(1.0-h1V))) |
| #define | faV (A2*c_alpha*c_alpha + A1*c_alpha + A0) |
| #define | facV (2.0*A2*c_alpha +A1) |
| #define | faccV (2.0*A2) |
| #define | fbV (B2*c_beta*c_beta + B1*c_beta + B0) |
| #define | fbcV (2.0*B2*c_beta +B1) |
| #define | fbccV (2.0*B2) |
| #define | h1V (3.0*n1*n1-2.0*n1*n1*n1) |
| #define | hn1V (6.0*n1-6.0*n1*n1) |
| #define | fbarrierV (n1*n1-2.0*n1*n1*n1+n1*n1*n1*n1) |
| #define | fbarriernV (2.0*n1-6.0*n1*n1+4.0*n1*n1*n1) |
| #define | rcV (c) |
| #define | rcxTemp ( cx + n1x*(c_alpha-c_beta)*hn1V + grad_mu_el * (h1V*faccV+(constV(1.0)-h1V)*fbccV)/constV(faccV*fbccV) ) |
| #define | rcxV (constV(-timeStep)*McV*rcxTemp) |
| #define | rn1V (n1-constV(timeStep*Mn1V)*( (fbV-faV)*hn1V - (c_beta-c_alpha)*facV*hn1V + W*fbarriernV + nDependentMisfitAC1 + heterMechAC1)) |
| #define | rn1xV (constV(-timeStep*Mn1V)*Knx1) |
+Variables | |
| double | Kn1 [3][3] ={{0.01*scaleFactor,0,0},{0,0.01*scaleFactor,0},{0,0,0.005*scaleFactor}} |
| double | sfts_linear1 [3][3] = {{0,0,0},{0,0,0},{0,0,0}} |
| double | sfts_const1 [3][3] = {{0.1305,0,0},{0,-0.0152,0},{0,0,-0.014}} |
| double | A2 = 100.0 |
| double | A1 = 0.0 |
| double | A0 = 0.0 |
| double | B2 = 100.0 |
| double | B1 = -25.0 |
| double | B0 = 1.5625 |
| #define faccV (2.0*A2) | +
| #define fbarriernV (2.0*n1-6.0*n1*n1+4.0*n1*n1*n1) | +
| #define fbarrierV (n1*n1-2.0*n1*n1*n1+n1*n1*n1*n1) | +
| #define fbccV (2.0*B2) | +
| #define h1V (3.0*n1*n1-2.0*n1*n1*n1) | +
| #define hn1V (6.0*n1-6.0*n1*n1) | +
| #define McV 1.0 | +
| #define Mn1V (300.0/scaleFactor) | +
| #define n_dependent_stiffness true | +
| #define need_grad {true, true, true} | +
| #define need_grad_LHS {false, false, true} | +
| #define need_grad_residual {true, true, true} | +
| #define need_grad_residual_LHS {false, false, true} | +
| #define need_hess {false, false, true} | +
| #define need_hess_LHS {false, false, false, false} | +
| #define need_val {true, true, false} | +
| #define need_val_LHS {false, true, false} | +
| #define need_val_residual {true, true, false} | +
| #define need_val_residual_LHS {false, false, false} | +
| #define num_var 3 | +
| #define rcV (c) | +
| #define rcxTemp ( cx + n1x*(c_alpha-c_beta)*hn1V + grad_mu_el * (h1V*faccV+(constV(1.0)-h1V)*fbccV)/constV(faccV*fbccV) ) | +
| #define rn1V (n1-constV(timeStep*Mn1V)*( (fbV-faV)*hn1V - (c_beta-c_alpha)*facV*hn1V + W*fbarriernV + nDependentMisfitAC1 + heterMechAC1)) | +
| #define variable_name {"c", "n1", "u"} | +
| #define W (0.8/scaleFactor) | +
| double A0 = 0.0 | +
| double A1 = 0.0 | +
| double A2 = 100.0 | +
| double B0 = 1.5625 | +
| double B1 = -25.0 | +
| double B2 = 100.0 | +
| double Kn1[3][3] ={{0.01*scaleFactor,0,0},{0,0.01*scaleFactor,0},{0,0,0.005*scaleFactor}} | +
| double sfts_const1[3][3] = {{0.1305,0,0},{0,-0.0152,0},{0,0,-0.014}} | +
| double sfts_linear1[3][3] = {{0,0,0},{0,0,0},{0,0,0}} | +
+ 1.8.10
+
+
+
diff --git a/html/single_precipitate_k_k_s_2equations_8h_source.html b/html/single_precipitate_k_k_s_2equations_8h_source.html
new file mode 100644
index 000000000..d9b885e66
--- /dev/null
+++ b/html/single_precipitate_k_k_s_2equations_8h_source.html
@@ -0,0 +1,601 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/single_precipitate_k_k_s_2main_8cc.html b/html/single_precipitate_k_k_s_2main_8cc.html
new file mode 100644
index 000000000..08cea16d3
--- /dev/null
+++ b/html/single_precipitate_k_k_s_2main_8cc.html
@@ -0,0 +1,142 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
#include "../../include/dealIIheaders.h"#include "parameters.h"#include "../../src/models/coupled/generalized_model.h"#include "equations.h"#include "ICs_and_BCs.h"#include "../../src/models/coupled/generalized_model_functions.h"+Functions | |
| int | main (int argc, char **argv) |
| int main | +( | +int | +argc, | +
| + | + | char ** | +argv | +
| + | ) | ++ |
+ 1.8.10
+
+
+
diff --git a/html/single_precipitate_k_k_s_2parameters_8h.html b/html/single_precipitate_k_k_s_2parameters_8h.html
new file mode 100644
index 000000000..0e6777c60
--- /dev/null
+++ b/html/single_precipitate_k_k_s_2parameters_8h.html
@@ -0,0 +1,530 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
Go to the source code of this file.
++Macros | |
| #define | problemDIM 3 |
| #define | scaleFactor 2.0 |
| #define | spanX (12.5*scaleFactor) |
| #define | spanY (12.5*scaleFactor) |
| #define | spanZ (12.5*scaleFactor) |
| #define | subdivisionsX 1 |
| #define | subdivisionsY 1 |
| #define | subdivisionsZ 1 |
| #define | refineFactor 5 |
| #define | finiteElementDegree 2 |
| #define | hAdaptivity true |
| #define | maxRefinementLevel (refineFactor+1) |
| #define | minRefinementLevel (0) |
| #define | refineCriterionFields {1} |
| #define | refineWindowMax {0.99} |
| #define | refineWindowMin {0.001} |
| #define | skipRemeshingSteps 100 |
| #define | timeStep (1.1e-4*scaleFactor*scaleFactor) |
| #define | timeIncrements 2500 |
| #define | timeFinal (timeStep*timeIncrements) |
| #define | solverType SolverCG |
| #define | absTol true |
| #define | solverTolerance 1.0e-3 |
| #define | maxSolverIterations 10000 |
| #define | writeOutput true |
| #define | outputCondition "EQUAL_SPACING" |
| #define | numOutputs 10 |
| #define | outputList {} |
| #define | skipPrintSteps 1000 |
| #define | calcEnergy true |
| #define absTol true | +
| #define calcEnergy true | +
| #define finiteElementDegree 2 | +
| #define hAdaptivity true | +
| #define maxRefinementLevel (refineFactor+1) | +
| #define maxSolverIterations 10000 | +
| #define minRefinementLevel (0) | +
| #define numOutputs 10 | +
| #define outputCondition "EQUAL_SPACING" | +
| #define outputList {} | +
| #define problemDIM 3 | +
| #define refineCriterionFields {1} | +
| #define refineFactor 5 | +
| #define refineWindowMax {0.99} | +
| #define refineWindowMin {0.001} | +
| #define scaleFactor 2.0 | +
| #define skipPrintSteps 1000 | +
| #define skipRemeshingSteps 100 | +
| #define solverTolerance 1.0e-3 | +
| #define solverType SolverCG | +
| #define spanX (12.5*scaleFactor) | +
| #define spanY (12.5*scaleFactor) | +
| #define spanZ (12.5*scaleFactor) | +
| #define subdivisionsX 1 | +
| #define subdivisionsY 1 | +
| #define subdivisionsZ 1 | +
| #define timeFinal (timeStep*timeIncrements) | +
| #define timeIncrements 2500 | +
| #define timeStep (1.1e-4*scaleFactor*scaleFactor) | +
| #define writeOutput true | +
+ 1.8.10
+
+
+
diff --git a/html/single_precipitate_k_k_s_2parameters_8h_source.html b/html/single_precipitate_k_k_s_2parameters_8h_source.html
new file mode 100644
index 000000000..3c70b1f9f
--- /dev/null
+++ b/html/single_precipitate_k_k_s_2parameters_8h_source.html
@@ -0,0 +1,212 @@
+
+
+
+
+
+
+|
+ PRISMS PhaseField
+ 1.0
+
+ |
+
+ 1.8.10
+
+
+
diff --git a/html/structnucleus.html b/html/structnucleus.html
index dbd02efb3..2966926af 100644
--- a/html/structnucleus.html
+++ b/html/structnucleus.html
@@ -98,7 +98,7 @@
Public Attributes
| dealii::Point< problemDIM > center | +dealii::Point< problemDIM > center |