disrupt

SU2C Disrupt IT Team Github Repository

Prerequisites

A working Java environment (e.g. JDK 18), you will need to know the path to the JDK executable.
jaydebeapi python package
accees to an OMOP instance with clinical data

copy the example configuration file config_omop_examp.json to config.json
edit the connectionprops at the end of config.json to match your connection settings to your OMOP database

Name		Name	Last commit message	Last commit date
Latest commit History 38 Commits
code-log		code-log
ref		ref
.gitignore		.gitignore
README.md		README.md
config_omop_example.json		config_omop_example.json
create_database.py		create_database.py
matcher.py		matcher.py
parser.py		parser.py
prettier.py		prettier.py
report_intro_text.py		report_intro_text.py
requirements.txt		requirements.txt
screener.py		screener.py