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Adding trelis dockerfile #702

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d08beb1
added dockerfile for using trelis
shimwell Jan 29, 2021
59b4e4e
Automated autopep8 fixes
Jan 29, 2021
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38 changes: 38 additions & 0 deletions DockerfileTrelis
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Original file line number Diff line number Diff line change
@@ -0,0 +1,38 @@
# You will need the dagmc plugin (trelis17.1_ubuntu18.04.tar.gz) and Trelis
# (trelis17.1_ubuntu18.04.tar.gz) downloaded and in the same folder as this
# Dockerfile

# buid with the following command
# sudo docker build -t paramak_with_trelis .

# run with the following command
# sudo docker run -p 8888:8888 -p 5053:5053 paramak_with_trelis


FROM ukaea/paramak

COPY trelis17.1_ubuntu18.04.tar.gz .
#this command installs trelis

RUN mkdir -p /opt/Trelis-17.1/

RUN tar -xf trelis17.1_ubuntu18.04.tar.gz -C /opt/Trelis-17.1

COPY Trelis-17.1.0-Lin64.deb .
RUN dpkg -i Trelis-17.1.0-Lin64.deb

RUN cd /opt/Trelis-17.1/bin && \
ln -s plugins/svalinn/libdagmc.so . && \
ln -s plugins/svalinn/libiGeom.so . && \
ln -s plugins/svalinn/libmakeWatertight.so . && \
ln -s plugins/svalinn/libmcnp2cad.so . && \
ln -s plugins/svalinn/libMOAB.so . && \
ln -s plugins/svalinn/libMOAB.so.5 .

# puts the path for trelis into the PATH env
ENV PATH=$PATH:/opt/Trelis-17.1/bin

# adds the license details, network or VPN connection will be needed
RUN echo 'HOST trelis-lic-1.services.l ANY 5053\nISV csimsoft' >> /opt/Trelis-17.1/bin/licenses/remote2.lic

# now trelis should run in --batch --nographics mode
19 changes: 15 additions & 4 deletions paramak/neutronics_utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -236,8 +236,13 @@ def get_neutronics_results_from_statepoint_file(
_save_2d_mesh_tally_as_png(
score=score,
tally=tally,
filename=tally.name.replace('(', '').replace(')', '').replace(',', '-')
)
filename=tally.name.replace(
'(',
'').replace(
')',
'').replace(
',',
'-'))

elif '_on_3D_mesh' in tally.name:
mesh_id = 1
Expand Down Expand Up @@ -278,8 +283,14 @@ def get_neutronics_results_from_statepoint_file(
tally_label=tally.name,
tally_data=data,
error_data=error,
outfile=tally.name.replace('(', '').replace(')', '').replace(',', '-') + '.vtk'
)
outfile=tally.name.replace(
'(',
'').replace(
')',
'').replace(
',',
'-') +
'.vtk')

else:
# this must be a standard score cell tally
Expand Down