Skip to content

export all-sample counts table #58

@kew24

Description

@kew24

In my implementation of the DESeq2 Rmd steps, I've separated things out by comparison. This means that each comparison exports counts & vst matrices for the samples w/in this comparison; however, there is no global matrix exported with all samples. To implement this, two options come to mind:

  1. this could be it's own short independent rule, or
  2. we could rework the entire DESeq2 rule to go back to a one-Rmd approach (just lapplying through each comparison, as Kin originally had it, iirc)

Creating this issue so we implement this eventually, regardless of which route we choose.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type
    No fields configured for issues without a type.

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions