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At present, MACS3 can be used for peak calling when running addReproduciblePeakSet(), by simply specifying the full path to MACS3 executable in the pathToMacs2 param. But the messaging/logging does not reflect MACS3 is used.
At present, MACS3 can be used for peak calling when running
addReproduciblePeakSet(), by simply specifying the full path to MACS3 executable in thepathToMacs2param. But the messaging/logging does not reflect MACS3 is used.