Docker

This is how I launch Docker containers!

Environment variables

PATH_TO_DOCKERFILE=""
DOCKER_USERNAME=""
DOCKER_IMAGE_NAME=""
TAG=""
PLATFORM="linux/amd64"
LOCAL_PORT=""
REMOTE_HOST=""
REMOTE_PORT=""
SSH_USERNAME=""
SSH_SERVER=""

Build docker image

cd ${PATH_TO_DOCKERFILE}
docker buildx build --platform ${PLATFORM} -t ${DOCKER_USERNAME}/${DOCKER_IMAGE_NAME}:${TAG} .
docker push ${DOCKER_USERNAME}/${DOCKER_IMAGE_NAME}:${TAG}

Pull singularity image file

singularity pull docker://${DOCKER_USERNAME}/${DOCKER_IMAGE_NAME}:${TAG}

Create docker container

sh rscript.sh
sh rserver.sh
sh python.sh
sh jupyter_lab.sh

Local port forwarding

ssh -oHostKeyAlgorithms=+ssh-rsa -N -L ${LOCAL_PORT}:${REMOTE_HOST}:${REMOTE_PORT} ${SSH_USERNAME}@${SSH_SERVER} -v

Access remote service

Open your browser and go to: http://localhost:${LOCAL_PORT}