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AngelOjedaBioinfo/README.md

Ángel Ojeda · @AngelOjedaBioinfo

Molecular biologist and bioinformatician based in Tena, Ecuador. I work at the intersection of epigenomics, Oxford Nanopore sequencing, and evolutionary biology, currently focused on DNA methylation (5mC and 5hmC) in Heliconius butterflies.

Laboratory Technician at Universidad Regional Amazónica Ikiam. MSc Bioinformatics, Universidad Internacional de Valencia (VIU).

What I work on

  • Epigenomics: ONT-based methylome characterization in non-model Lepidoptera
  • Thermal stress genomics: HSP expression under temperature gradients in Heliconius
  • Diagnostic tools: BLAST-based synthetic positive control extraction for zoonotic disease detection
  • Teaching: molecular biology techniques for ~440 students/week across 4 undergraduate programs

Tools & languages

Python R Bash Linux

Bioinformatics: modkit · minimap2 · samtools · bedtools · DSS · Snakemake · BLAST+
Wet lab: RT-qPCR · ONT library prep · DNA/RNA extraction · CRISPR/Cas9 microinjection · Lepidoptera rearing

Selected repositories

Repository Description
heliconius-ont-methylome Reproducible ONT pipeline for simultaneous 5mC and 5hmC detection in insect brain tissue
synthetic-amplicon-extractor BLAST-based tool to extract amplicon sequences for synthetic positive controls in PCR diagnostics

Stats

ORCID DOI

Popular repositories Loading

  1. heliconius-ont-methylome heliconius-ont-methylome Public

    Reproducible ONT pipeline for simultaneous 5mC and 5hmC methylation analysis in Lepidoptera

    R

  2. AngelOjedaBioinfo AngelOjedaBioinfo Public

  3. synthetic-amplicon-extractor synthetic-amplicon-extractor Public

    BLAST-based tool to extract amplicon sequences for synthetic positive controls in PCR-based diagnostics

    Python