R interface to Google DeepMind AlphaGenome API. Bridging gRPC-based multimodal genomic predictions (RNA-seq, ATAC, Splicing, 3D Genome) into R-native workflows.

A modular, production-ready Snakemake pipeline for CUT&RUN epigenomic analysis — featuring E. coli spike-in normalization, SEACR peak calling, fragment size analysis, and comprehensive QC reporting. Designed following ENCODE and nf-core best practices.

A production-grade, modular Snakemake framework for reproducible ATAC-seq analysis, featuring upfront configuration validation and robust QC gating.

R interface to Evo 2 via NVIDIA BioNeMo. Enabling zero-shot variant effect prediction and generative genomics in R-native workflows.

A lightweight python package that infers chromatin remodelling velocity from scATAC-seq data

A centralized PostgreSQL database to store and manage sample metadata across all BDB Genomics epigenomic pipeline assays with integrated QC tracking to flag and monitor low-quality samples.

Landing page of the BDB Genomics | Computational Epigenomics