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@CoBrALab

Computational Brain Anatomy Laboratory

Computational Brain Anatomy Laboratory, located in the CIC at the Douglas Institute, McGill University

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  1. atlases atlases Public

    Segmentations of Neuroanatomy on Hi-Res T1 and T2 MRIs and publicly available population averages in MNI space

    Python 34 21

  2. optimized_antsMultivariateTemplateConstruction optimized_antsMultivariateTemplateConstruction Public

    A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support

    Shell 35 11

  3. AllenHumanGeneMNI AllenHumanGeneMNI Public

    Careful multispectral registration of the Allen Human Brain Gene Samples in MNI ICBM NLIN SYM 09c space

    Jupyter Notebook 9

  4. MAGeTBrain-nextflow MAGeTBrain-nextflow Public

    Nextflow

  5. RABIES RABIES Public

    fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/

    Python 48 22

  6. libBIDS.sh libBIDS.sh Public

    Shell 21 3

Repositories

Showing 10 of 52 repositories
  • documentation Public

    Documentation for every thing, everything documented

    CoBrALab/documentation’s past year of commit activity
    43 7 2 1 Updated Jan 5, 2026
  • RABIES Public

    fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/

    CoBrALab/RABIES’s past year of commit activity
    Python 48 22 49 6 Updated Dec 23, 2025
  • simpleitk_timeseries_motion_correction Public
    CoBrALab/simpleitk_timeseries_motion_correction’s past year of commit activity
    Python 1 1 10 1 Updated Dec 17, 2025
  • ODC-Mouse-Forms Public

    A repo containing OpenDataCapture forms for tracking mouse data gathered from experiments within the CoBra Lab

    CoBrALab/ODC-Mouse-Forms’s past year of commit activity
    TypeScript 1 1 17 4 Updated Dec 16, 2025
  • antsRegistration_affine_SyN Public
    CoBrALab/antsRegistration_affine_SyN’s past year of commit activity
    Shell 2 0 2 0 Updated Dec 12, 2025
  • synthstrip_N3 Public

    A preprocessing tool for human T1w MRIs

    CoBrALab/synthstrip_N3’s past year of commit activity
    Shell 2 1 6 0 Updated Nov 27, 2025
  • cobralib Public

    Utility and helper scripts

    CoBrALab/cobralib’s past year of commit activity
    Shell 0 0 0 0 Updated Nov 26, 2025
  • MAGeTBrain-nextflow Public
    CoBrALab/MAGeTBrain-nextflow’s past year of commit activity
    Nextflow 0 0 13 0 Updated Nov 19, 2025
  • iterativeN3 Public
    CoBrALab/iterativeN3’s past year of commit activity
    Shell 0 0 8 0 Updated Nov 12, 2025
  • iterativeN4_multispectral Public

    A pipeline which performs iterative classification and bias field correction of T1-weighted MRIs

    CoBrALab/iterativeN4_multispectral’s past year of commit activity
    Shell 1 1 10 0 Updated Nov 12, 2025
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