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231 display lcms data#232

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231-display-lcms-data
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231 display lcms data#232
baolanlequang wants to merge 125 commits into
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231-display-lcms-data

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@baolanlequang baolanlequang commented Aug 21, 2024

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Closes #254

@baolanlequang baolanlequang added the enhancement New feature or request label Aug 21, 2024
@baolanlequang baolanlequang force-pushed the 231-display-lcms-data branch 7 times, most recently from 6e56218 to ac30aa4 Compare September 2, 2024 07:30
@baolanlequang baolanlequang force-pushed the 231-display-lcms-data branch 7 times, most recently from 5d7f862 to 8238de9 Compare September 12, 2024 14:01
Nicolass67 and others added 5 commits April 30, 2025 11:38
feat: display threshold for multiple spectra
Introduce a new, specific action (resetMultiplicity) to reset the multiplicity state to its initial value, preventing any data from leaking between views.

- add resetMultiplicity action and handle it in the corresponding reducer
- update layer_init.js to call this new action when the spectrum type changes to a non-NMR layout
- lint layer_init.js
Bumps [http-proxy-middleware](https://github.com/chimurai/http-proxy-middleware) from 2.0.7 to 2.0.9.
- [Release notes](https://github.com/chimurai/http-proxy-middleware/releases)
- [Changelog](https://github.com/chimurai/http-proxy-middleware/blob/v2.0.9/CHANGELOG.md)
- [Commits](chimurai/http-proxy-middleware@v2.0.7...v2.0.9)

---
updated-dependencies:
- dependency-name: http-proxy-middleware
  dependency-version: 2.0.9
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [@babel/runtime](https://github.com/babel/babel/tree/HEAD/packages/babel-runtime) from 7.24.8 to 7.27.0.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v7.27.0/packages/babel-runtime)

---
updated-dependencies:
- dependency-name: "@babel/runtime"
  dependency-version: 7.27.0
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* chore: bump version from 1.3.6 to 1.4.0

* ci: bump node engine from 18 to 22

* move babelrc into package.json

add @babel/plugin-transform-runtime
add postcss-normalize
npx update-browserslist-db@latest

upgrade interactive
 - babel
 - cypress
 - type
@Nicolass67 Nicolass67 self-assigned this Aug 14, 2025
@Nicolass67 Nicolass67 moved this to In Progress in Staging Aug 14, 2025
@Nicolass67 Nicolass67 linked an issue Aug 14, 2025 that may be closed by this pull request
7 tasks
Nicolass67 and others added 5 commits November 3, 2025 14:15
* feat: auto select Reference from solvent metadata when unset

Auto select the Reference in the top bar when a matching solvent is found
Use a robust matcher on solvent label and name
Keep manual choice if a Reference is already set

Build a normalized solvent key from feature metadata
Score each candidate and choose the best one
Select value is now ref.name
Wrapped the buttons in a element to correctly capture hover events and handle refs, aligning them with other working buttons (like Undo/Redo).
Bumps [node-forge](https://github.com/digitalbazaar/forge) from 1.3.1 to 1.3.2.
- [Changelog](https://github.com/digitalbazaar/forge/blob/main/CHANGELOG.md)
- [Commits](digitalbazaar/forge@v1.3.1...v1.3.2)

---
updated-dependencies:
- dependency-name: node-forge
  dependency-version: 1.3.2
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
PiTrem and others added 20 commits May 18, 2026 15:59
Replace LICENSE file with MIT license (copyright 2016–2026 Nicole Jung - KIT),
update package.json license field, and add MIT badge to README.
MS: hover labels use toolbar decimal setting
MS: show relative intensity with m/z on hover
…ugin-transform-modules-systemjs-7.29.4

chore(deps): bump @babel/plugin-transform-modules-systemjs from 7.27.1 to 7.29.4
…-3.1.2

chore(deps): bump fast-uri from 3.0.1 to 3.1.2
chore: Bump version from 1.7.1 to 1.7.2
Regenerate yarn.lock from merged package.json after resolving lockfile conflict.
+ ignore null children in toolbar collapse count
PiTrem and others added 8 commits June 26, 2026 16:22
Adds src/__tests__/units/pr232_review_blocking.test.tsx, one self-contained
suite that reproduces each of the seven blocking issues raised in the review of
this PR. Every test asserts the correct (post-fix) behaviour, so it fails on the
current branch and turns green once the bug is fixed.

- B1 saga_ui.js: peak-add no longer dispatches EDITPEAK.ADD_POSITIVE on
  non-LCMS layouts (NMR/IR/MS), so peak-add silently no-ops.
- B2 integration.js getArea: trapezoidally integrates the cumulative `k`
  curve instead of returning k(xU)-k(xL); wrong NMR/CV integral.
- B3 integration.js getAbsoluteArea: uses cumulative `k` instead of raw `y`.
- B4 chem.js Convert2Peak: LC/MS branch discards stored peaks and ignores offset.
- B5 multi_focus.js: CV current-density factor double-divides by 100 for mm².
- B6 d3_line_rect/index.js: componentDidUpdate dereferences data[0] unguarded.
- B7 rect_focus.js drawBar: dereferences tTrEndPts[0] with no length guard.

Run: yarn test --watchAll=false src/__tests__/units/pr232_review_blocking.test.tsx
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Display LCMS data

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